Amborella trichopoda: 18430474
Help
Entry
18430474 CDS
T02990
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18430474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18430474
03009 Ribosome biogenesis [BR:
atr03009
]
18430474
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18430474
Spliceosome [BR:
atr03041
]
Complex A
U1 snRNP components
U1 related factors
18430474
Complex B
18430474
Ribosome biogenesis [BR:
atr03009
]
Eukaryotic type
Pre-60S particles
Helicases
18430474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18430474
NCBI-ProteinID:
XP_006840690
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MATASAGPRYAPEDPTLPKPWRGLVDGSTGYLYYWNPETNVTQYERPVAPAPPLPSGPPP
QGAPKIASIPVSLVQQQSGPPNQQMGGGSSDYGPQSVGGAPSGHGQQMMVGQGVMGSNGN
DRRAGDDGRRNGGMDPGMMMGHQPKLAAIPMARNQQHQVMRHGGVHQQNGPSVPSNGSSS
AMGHVAHNMYAHGPSSQAYSNNQPMRSSTRDTSSLTHEGYRRQHEITVMGDNVPAPFMTF
ESTGFPSEILKEVQHAGFSSPTPIQAQTWPVALKGRDIVAIAKTGSGKTLGYLIPAFIHL
KRLRMDPGMRIDPRMGPVVLVLSPTRELATQIQDEVVKFGRSSKITCTCLYGGAPKGPQL
KDVDRGVDIVVATPGRLNDILEMRRVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPP
RRQTLMYTATWPKEVRKIAADLLARPIQVNIGNMDELAANKSITQYVEVVMPMDKQRRLE
QILRSQEPGSKVIIFCSTKRMCDQLARSISRQFGAAAIHGDKSQGERDWVLNQFRNGKSP
ILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGISYTFFSDQDAKYA
SDLIKVLEGAGQRVPPDIRNMASRASSHLGKRNRWSDNSRGGGGPGNRGGGGRSDHRGGS
GGRGPPAWSDRSHNEGGSSRGRHEWGQGRSRSRSRSRSPGRSRSAWGGGSSGYNNSSKSR
SRSRSRSRSRSRSHERGGFGGGNRYGGGVGGDIRERSSPPSRKDGTPLFVRRDMERAQSP
PNGDGLGATRKDGLGSSPACDDDVGQVRGGDGWQDSPPYAEGSFHGGDAVDDDLPEVVPV
VPGLESEAVA
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgcttctgctggtccacgctatgcacctgaagatccaaccctcccaaagcca
tggcgaggcctggttgatggtagcaccggttatttgtattattggaaccctgaaaccaat
gtgacccaatatgaaagaccagtggctccagctcctccattaccatcagggcctccacct
caaggtgccccaaagatcgcctctatcccggtctcattggttcagcaacaatcagggcca
ccaaatcaacagatgggtggtggatcatcggattatgggccgcaatcggtgggtggtgcc
ccatctggtcatggacaacagatgatggtgggtcagggtgtgatgggaagtaacgggaat
gatagaagggctggggatgatgggcgacgtaatggtggtatggatcctggcatgatgatg
gggcatcaaccgaagcttgctgcaattccaatggctcggaaccagcagcatcaggtgatg
aggcatgggggagttcatcaacaaaatggaccatctgtcccttccaatggatcgagttct
gctatgggacatgtggcgcataatatgtatgctcatgggcccagttctcaagcatactct
aataaccaaccaatgagatcatctacaagagatacaagttctcttactcatgagggttac
cgtcgtcagcatgagataactgttatgggagacaatgtaccggcacctttcatgacattt
gaatctactggtttcccttctgagatcctgaaagaggtacagcatgccggattttcctct
cccacaccaatacaggcacagacatggccagtagcccttaaaggtcgggacatagtagcc
attgctaagacagggtcagggaagaccctgggttacctaatcccagccttcattcacttg
aaacgcttgcgaatggatcctggaatgcggattgatccacgaatgggccctgttgtgttg
gtgctatctccaacgagggagcttgcaacacagatccaagatgaagttgtgaagtttggt
cgttcatccaaaatcacatgcacgtgtttatatgggggagctcccaagggccctcagctg
aaggatgtggacaggggcgtggacatcgttgttgcaacaccagggcgactaaatgacata
ctagagatgaggagggtgagcctgaagcaggtatcatacttggtacttgatgaggcagac
cgtatgcttgatatgggttttgagccccagattcgaaaaattgttaaggaaataccccca
cgccgacagacactcatgtacactgcaacatggcccaaagaggttcgtaagattgctgcc
gacttactggcacgtcccatccaggttaatataggaaacatggacgagcttgctgcaaac
aaatctatcactcagtatgtggaagtggtgatgcccatggacaagcagaggcggctagag
cagatcctgcgttcgcaagagccaggttcgaaggtcattatcttctgctcaacaaagagg
atgtgcgatcaactcgctcgctcaatctcccgtcagtttggtgctgcagccatacatgga
gacaagtctcagggggagagagattgggtccttaaccaatttcgcaatggcaaatctcct
atccttgtggccacggatgttgctgctaggggtcttgatattaaagatatcagggtggtg
atcaactatgacttccctacaggcgtcgaggactacgtgcaccgtattggtcgcacaggc
cgtgcaggagccacaggtatttcatacaccttcttctctgaccaggatgccaagtacgcg
tctgacctcatcaaggtccttgagggtgccggccagcgtgtccctcctgacatccgcaac
atggcttcccgtgcttcttcccacctcggcaagcgcaaccggtggtctgacaattctcgt
ggtggaggtggacctggcaacaggggtggaggcggacgtagtgatcatcgtggtggaagt
ggagggcggggcccaccagcttggtcagacaggtcacataacgagggaggtagcagtcgg
ggtcgacatgaatggggccaaggccgaagtaggagccgcagccgtagcagaagcccaggc
aggtcccgcagtgcgtggggtggcggtagcagtggttataacaatagtagtaagtcgagg
agtaggagtaggagtaggagtaggagtcggagcaggagccatgagagggggggttttggt
ggtggcaataggtatggaggtggtgttgggggggacatcagggaaaggtcatctccgcct
tcaaggaaagatggcactcctctctttgttagaagggatatggaaagggcacagtcacct
ccaaatggggatggattaggggcgacaaggaaggatggtttagggtcttcaccggcatgt
gatgatgatgttggacaggtgagggggggtgatgggtggcaggattcacctccttatgcg
gagggttctttccatggtggggatgcagtggatgatgatttgccagaggtggtgcctgtg
gttccaggactggagtcggaggcagttgcctga
DBGET
integrated database retrieval system
