KEGG   Amborella trichopoda: 18430769
Entry
18430769          CDS       T02990                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
atr  Amborella trichopoda
Pathway
atr04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    18430769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18430769
   03009 Ribosome biogenesis [BR:atr03009]
    18430769
   04131 Membrane trafficking [BR:atr04131]
    18430769
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:atr04147]
    18430769
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     18430769
Ribosome biogenesis [BR:atr03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    18430769
Membrane trafficking [BR:atr04131]
 SNARE
  SNARE associated proteins
   Others
    18430769
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    18430769
Exosome [BR:atr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   18430769
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 CDC48_2 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase AAA_17 nSTAND3 Mg_chelatase AAA_28 ATPase_2 Parvo_NS1 AAA_18 Vps4_C IstB_IS21 ABC_tran Viral_helicase1 AAA_7 NACHT NB-ARC TsaE AAA_24 ResIII DUF815 Zeta_toxin Sigma54_activ_2 Zot
Other DBs
NCBI-GeneID: 18430769
NCBI-ProteinID: XP_006840975
UniProt: W1P6P0
LinkDB
Position
Unknown
AA seq 812 aa
MAASSSDQPESSSDAKGKKDFSTAILERKKAPNRLVVDEAINDDNSVVSMNPATMEKLQF
FRGDTILIKGKKRKDTVCVVLVDEQCEEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYG
KRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPARKGDLFLVRGGMRSVEFKVIETDPG
DYCVVAPDTEIFCEGEPVRREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKS
IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE
AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLQSRAHVIVMGATNRPNS
IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLERVAKDTHGYVGADLA
ALCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVVEVP
NVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIA
NECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD
AGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEAS
RLQIFKACLRKSPVSKDVDLSALAHYAHGFSGADITEICQRACKYAIRENIEKDIERERK
KSENPEAMEEDDIDDVPEIKAAHFEESMKYARRSVSDADIRKYQMFAQTLHQSRGFGSEF
RFPERPENPSGTGAADPLSSTAPVGDDDDLYN
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggcggcatcgagttctgatcaacctgaatcgtcttctgatgcaaaaggaaagaaggat
tttagcacagcaattctggaacgtaagaaagcccctaatcgccttgttgtcgatgaagct
atcaatgatgacaattcagttgtctccatgaaccctgcaactatggagaagcttcaattt
ttccgtggagatactattcttatcaaggggaaaaagcggaaggatacagtatgtgtcgtt
ctggttgatgagcagtgtgaagaacccaagattagaatgaacaaagtagtgagggctaat
ctaagggtgcgtcttggtgatgtcgtctctgtgcatcagtgccctgatgttaagtatggg
aagcgtgttcacatccttccaattgatgatacaattgagggtgtgaccgggaatctcttt
gatgcttatttaaaaccttacttcttggaatcctatcggccggctagaaagggagatctg
tttcttgtcagaggtggtatgcgaagtgttgaattcaaagtcattgagacagatcctggt
gattattgtgttgttgccccagatactgagatattctgtgagggggagcctgtgaggcgt
gaggatgaagaaagattgaatgaggtaggatatgatgatgttggtggagttagaaagcaa
atggctcaaatacgcgagctggttgaacttcctctgagacaccctcagctttttaagtct
atcggtgtgaagcctccaaaaggtatattgctgtatgggccaccaggttctgggaaaacc
ctaattgcacgagctgttgccaatgaaactggtgcatttttcttcttaatcaatgggccc
gagatcatgtcaaagctggctggagagagcgaaagcaatctaagaaaagcttttgaggag
gcagagaaaaatgctccatctatcatttttattgatgaaattgactctatagccccaaag
agagaaaaaacacatggtgaagtagaaaggcgcattgtatcacaacttcttactcttatg
gatggtcttcagtcccgagctcatgtaattgtgatgggggctactaataggcccaatagc
attgacccagctcttagaaggttcggaaggtttgatcgggagattgatattggtgttcca
gatgaagtcggaaggctggaagtccttcgtattcatacgaagaatatgaagcttgcagat
gatgtggatcttgaaagagtagccaaagacacacatgggtatgttggtgcagatcttgct
gctctttgcacggaggctgcactccagtgcatcagggaaaagatggacatcatcgacctg
gaggatgaaacaatcgatgccgagattctcaactccatggctgtgacaaatgaacacttt
caaactgcattgggttcttcgaatccatctgctttgcgtgaaacggttgttgaggtaccg
aatgtctcatgggaagatattggtggtttggacaatgtcaagagggagcttcaggagact
gttcaatacccagtggagcatcctgagaaatttgagaagtttggcatgtcaccatctaaa
ggagtattattttatggccctcctggctgtgggaaaaccctccttgcaaaggccattgca
aacgagtgtcaggctaacttcattagtgttaagggacctgaattgttgacgatgtggttt
ggagaaagtgaagctaacgtgcgagagatattcgataaagcccgccagtcggctccatgt
gtgcttttctttgatgaacttgattcgattgctactcagcgtggaagtagtgttggtgat
gctggtggtgctgccgatagggttttgaatcagctgttgacagaaatggatggcatgaat
gcaaagaagacagttttcatcattggggcaaccaataggcccgacattattgaccctgca
ttgctaaggcctggacgattggaccagctgatttacattcccttgccagatgaggcttca
aggctgcaaattttcaaggcttgcttgcgcaaatcccctgtttcaaaggatgttgatctc
tcagcccttgctcactatgctcatggtttcagtggagctgatatcacagaaatatgtcag
cgtgcttgcaaatatgcaatcagagagaacattgagaaggacatcgaacgggagaggaag
aagagtgagaatcccgaggcaatggaggaggatgacattgatgatgttcccgagatcaag
gctgcacattttgaagagtccatgaaatatgccaggaggagtgtcagtgatgctgacatt
cgcaagtaccaaatgtttgctcaaactctgcatcaatctcgaggatttgggtcagagttt
cgattccccgagcgacctgaaaatccctcaggaacaggggctgcagatccattatcttct
acagctcctgttggcgatgatgatgatctttataattaa

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