Amborella trichopoda: 18430795
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Entry
18430795 CDS
T02990
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
atr
Amborella trichopoda
Pathway
atr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18430795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atr03036
]
18430795
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
18430795
SWR1 complex
18430795
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
HDA2-3
DBINO
Myb_DNA-binding
SANT_DAMP1_like
DUF1644
Motif
Other DBs
NCBI-GeneID:
18430795
NCBI-ProteinID:
XP_011622082
LinkDB
All DBs
Position
Unknown
AA seq
2125 aa
AA seq
DB search
MTSKGPRSKLDHESRARRQKVLEVPKEPRRPKTHWDHVLEEMVWLSKDFESEKKWKLAQA
KRVAIRASKSLLEHATLGERKVKEEELRLRKISLGISKDVKKFWMKIEKLVLYKHQLELE
ERKKKALDKQLDFLLDQTERYSTMLAENLIDMPFPSKQGIPCVKQPLALESGQEQPADQS
EKGDEGGFIGSPEHPGSYSDNVEHDEDFDMHSEEESEDDEQTMEDDEALITEEERREELE
ALQNEVDMPLEELLKRYMGDQAIGVKISESSNDAAIEPVLEEKGLINSTSGTVMKEINNK
NRKERASSDFSSELVIPVSVDEGNKYFMCKPFENSIIADMATEGKGVLQSDGKEIETCDG
KVPAANLASVSRASLPEKQHQSDEHHVVFTPVKVKESNGEVCILQNGSALDEESGHLDFG
DELDDIEYILTAEDEKDDETTLAEEEEFAKSEANDPSDEIKLLQQESEMPLEELLAMYKM
DTCKDEDDLSASECASTSSEEQVDHSGNKEVKGEDSGPDEDRDGLTVLPSDSTEIESFSP
LKHSVMQKLKGKLENRTEEGRESENIIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHP
LREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTS
VMLNWETEFLKWCPAFKILTYFGTAKERKNKRQGWLKPNSFHVCITTYRLVIQDAKVFKR
KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVF
QSHQEFKDWFSNPISGMVEGQDRVNKEVVDRLHNVLRPFILRRLKRDVEKQLPKKYEHVI
YCRLSRRQRNLYEDFIASSETQETLASANFFGMISIIMQLRKVCNHPDLFEGRPIISSFD
MVGIYMQLSSSVCTVLSSGPLSKVDLMGLSFLFTHLDFSMTSWENEEFAAIATPSNVIVE
VNSVDKIGKLSGYCERRKRTPGNNIFEEIQRALIEERVKEARERAASFAWWHSLLTRRKP
TYGTNLREVLTIKHPVLDIHQQKMKPSDYMNFSSKLGDIILLPTERLKQVFHLVECFMFA
IPAARAPMPVCWCSKQGSPVVLHPAFKEICTEVFGPLLAPIRPAIVRRQVYFPDRRLIQF
DCGKLQQLAILLRRLKSEGHRALIFTQMTKMLDILEAFISLYGYTYMRLDGSTQPEERQT
LMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDNQAQDRCHRIGQTRE
VHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTVIDET
MPKGDPNALQNSSREALLSNAEVEAALKLAEDEADYMALKKVELEEAVDNQEFLEEAMGR
LEDDEYANDDDGKPDEKRACEDNIVTDRKYKTSGVSVAESIENEDKALMVAGEEDDLDML
ADVKQMAAAAAAAGQASSSFENQLRPIDRYAMRFLDLWDPIVDKSAIESQVRFEETEWEL
ERLEKLKEDLEAEIDEDEEPLQYESWDTELATEAYRQHVEALAQRQLMEELESETREAAD
DDDQGDTNRKVKSSDRKTKTKKKTKKAKFKSLKKGALASDSEALPAIPIPEAPEISKEKK
TPSSAAISVSNKKRRAPKLPNEGKIQKKGSKKHKKGGTVGTHVVGSESQDKNSEIESPNT
IGIHDVDVKPASRSKMGGKISITAMPVKRVMVIKLEKAKYKKEHIPSPDSWTTQEDALLC
AIVHEYGLHWNLASDTLYGMPAGGFYRGRFRHPAHCLKRFRELFLGHISSATENPNTEKN
HSGGAKALLKVTEDHVHWLLDVASDQPDNELLLQKHFTAILSSVWRARSCYDHIHGPMAS
RNSCSLGRGQISDKLKREPARRFLALSSRSSKLVSMALNSSFGIEPREHPVNYFWQQVPP
TPSMENRKGSETLEIRLVLGNGKDDWGEGFPSNIDLLISGSDPEQPAPQEQLSKNLLPQL
SCQIAEVRFRLASNSCFEGEGYSWASSAFPISEFVKHRSSKSSTLGKHKLSTDPHKTPKS
KLAKTTNLNEDTQSTLALEIHHPPEPSPEVPSLFSPGNLIHWPDSGIEDLHPLIENWDDH
APQFYDTVFFEALEDLSWLDNPGFE
NT seq
6378 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaaaggccccagatctaagcttgatcatgaatcaagagccagacgccaaaag
gttcttgaagtgcctaaagagcctcgtcgtccaaaaacacattgggatcatgtcttagaa
gaaatggtttggttatcgaaggactttgagtcagagaaaaaatggaagctggctcaggca
aagcgggtggctataagagctagtaagagtttgttagagcatgccacattaggagaaagg
aaagtgaaggaagaagagttgcgattgcgaaaaatttctcttggaatatccaaggatgtg
aagaaattttggatgaaaatagagaaactggttttatacaaacatcagctagagctggaa
gagagaaagaagaaagctcttgataaacagcttgattttcttctggatcagactgaaagg
tactctacgatgctggcagaaaaccttatagatatgccattcccttccaagcaagggatc
ccatgcgtgaagcagccattagcattagaatcaggacaggagcagccagctgatcaaagt
gaaaaaggggatgaagggggttttattggaagtccagaacaccctggttcgtactcagat
aatgtggaacatgatgaagattttgatatgcactctgaagaggaatcggaggatgatgag
caaactatggaagatgatgaggctctcataactgaggaagaacggagggaggaactggaa
gctttgcaaaatgaggttgatatgcctctagaagagctactcaagcgttacatgggtgat
caggctattggggttaaaatttcagagagcagtaacgatgctgcaattgagcctgtgttg
gaagaaaaaggtcttatcaatagtacaagtggaactgtcatgaaggaaattaataataaa
aacagaaaagagagagctagttctgatttctctagtgaactagtaattccagtttctgta
gatgaaggaaacaaatatttcatgtgtaaaccttttgaaaattcaattatagcagatatg
gctacggaaggaaaaggagttctccaatctgatggaaaagagatagaaacatgtgatgga
aaagtccctgctgcaaatcttgcaagtgttagtagggcatctttaccagaaaaacaacac
caaagtgatgaacatcatgtggtttttactcctgtaaaagtgaaagaaagtaacggtgaa
gtatgcattttgcaaaatggcagtgccttggatgaagaatctgggcatcttgattttggt
gatgaattggatgatatagagtacatcctcacagccgaagatgaaaaggatgatgagact
accttggctgaagaggaggaatttgccaaaagcgaagctaatgacccctcagatgagatc
aagttactgcagcaggagagtgaaatgcccctagaagagttacttgcgatgtataaaatg
gatacctgcaaggatgaagatgacctctctgcatctgaatgtgcttctaccagttctgag
gaacaagttgatcattctgggaataaggaagtaaaaggggaagattctggtccagatgaa
gatagagatggtctgacagttttgccaagtgactccacggaaattgagtcattttcccca
ttgaaacattctgtaatgcaaaaactcaaaggaaagctcgaaaacagaactgaagaaggg
cgggaaagtgagaatataattgctgatgcagcagctgctgcccgatcagcacagccaacc
ggaaacactttcttgacaacaaaagtgcgtacaaaatttccatttcttctcaagcatccc
cttcgtgagtaccaacatattggtttagattggcttgtgacaatgtacgagaagagactg
aatggaattttggctgatgaaatggggttgggaaagacaattatgactatctctctttta
gcgcacttggcttgtgaaaagggaatatggggaccccatctcatagttgtccccaccagt
gttatgctcaactgggaaactgagttcctgaaatggtgccctgcctttaagattctaacc
tactttggaactgcgaaagaacgaaagaataaacggcaaggctggttaaagcccaactct
tttcatgtgtgcataacaacttacaggcttgtcatacaggatgcaaaggtttttaagcga
aagaaatggaagtatctgattctggatgaggctcaccttataaagaattggaaatcccag
aggtggcaaaccctgttgaacttcaattctaagagaagaattctgttgacagggacgcct
ttgcaaaatgacctcatggagctatggtctttgatgcatttcctgatgcctcatgttttt
cagtcccatcaggaattcaaagattggtttagcaatccaatctcaggcatggttgaagga
caagatagggtcaataaggaagtggttgatcgtctccacaatgtgttgcgccctttcatt
ctgaggcggttgaaacgggatgtagaaaagcaacttcccaagaagtatgagcatgtcata
tactgccgattgtcaagaaggcagcgcaatttatatgaggattttattgccagctcagag
acacaagaaacattggctagtgcgaatttttttgggatgattagtatcataatgcaactt
cggaaggtgtgcaaccatcccgacctttttgaaggccgtcctatcataagctcatttgat
atggttggtatttacatgcaactgagttcttctgtttgtacagtactatcctctggccca
ttatctaaagtagatctaatgggtttgtcatttttattcactcatcttgatttcagcatg
acttcttgggaaaatgaagagtttgctgcaattgcgaccccttcgaatgtcattgtagag
gttaacagcgttgacaaaattggaaagctgtcaggatactgtgagcgtaggaagagaaca
cctgggaataatatttttgaggaaattcaaagagctcttattgaggaaagagtgaaagag
gctagagaacgggcagcatcttttgcgtggtggcattcattgctgactcgcaggaaacct
acgtatggcacaaatctaagggaggttcttaccataaaacatcctgttcttgatattcat
cagcaaaagatgaaaccctcagactacatgaatttttcatcaaagctgggggatattatt
ttgttgcctactgaacggcttaagcaagtgtttcacttggttgaatgttttatgtttgca
attcctgctgcgcgtgcccctatgcctgtttgttggtgcagtaagcagggatctccagtt
gttctccatcctgcctttaaggaaatctgcacagaggtttttggtccacttttagcacca
ataaggcccgctattgtgcggaggcaagtctattttcctgatagacggcttatacaattt
gattgtggtaagctacaacaacttgcaatcctgttgagacgcttgaaatctgaaggtcac
agagcattaatatttacacagatgaccaaaatgcttgatattttggaggcattcattagc
ctgtatggttacacgtacatgcgcctagatggttccactcaacctgaggagcgacaaaca
ctgatgcagaggtttaatacaaatccaaaaatttttctttttattttatcaacgaggagt
ggtggtgttggaatcaacttggttggggcagacacggtcatcttttatgacagtgactgg
aatcctgccatggacaaccaggcacaagatagatgccatcgaatagggcagacaagggaa
gtccatatttacaggctaataagtgagagtacaattgaagagaatattttaaagaaagca
aaccagaaacgtgctcttgatgatttggttattcagagtggtggttataacacagaattc
ttcaaaaagcttgaccccatggagttattttctggccacagaactgttatcgatgaaact
atgcctaaaggggacccaaatgctctccaaaattctagcagggaggcccttttatcgaat
gcagaagtggaggctgctctgaaacttgcagaagatgaagcagactatatggctttgaag
aaagttgaactggaagaggcagtggataatcaggagttcttagaagaagctatgggtagg
ttagaagatgatgaatatgcaaatgacgatgatggaaagcccgatgagaaaagagcttgt
gaagacaacattgttactgataggaagtataagactagtggtgtcagtgtagctgagtct
attgaaaatgaagacaaggctcttatggtagcaggtgaggaggatgatcttgatatgctg
gctgatgtcaaacagatggcagcagcggcagctgcagcaggacaggcaagttcatccttt
gaaaatcagctacgccctatagaccgatatgcaatgcggttcctggacctttgggaccct
atagtagacaaatctgctatagaatctcaggtcaggtttgaggagacagaatgggaatta
gaacgtcttgagaaactcaaggaggatctagaggctgagattgatgaagatgaagaacct
ttgcagtatgaaagctgggatacggagcttgcaacggaagcgtaccggcagcatgttgag
gccttagctcagcgtcagttaatggaagagctagagtcagaaactagagaggcagctgat
gacgatgatcaaggagacacaaacaggaaggtgaaatcaagtgaccgtaagaccaaaaca
aaaaagaagacaaagaaggcaaaattcaagtctttgaagaaaggagccctggcgtccgat
tcagaagcattgcctgcaattccaataccagaagctccagaaatatccaaagagaaaaag
acgcctagcagtgcagcaatttcagtaagcaataagaagaggagagctcctaaattaccc
aatgaggggaaaattcaaaagaagggctcaaagaaacataagaaaggaggcactgttggt
actcatgttgtgggctcagaaagtcaagataagaactctgaaattgaatctccgaacaca
ataggcatccatgatgttgatgtgaaaccagcaagccggagcaaaatgggtgggaagatt
tctataacggctatgcctgtaaagcgggttatggttatcaaattggaaaaggcaaagtac
aagaaagagcatatccctagtccagattcttggacaacgcaagaagatgctttattgtgt
gccattgtacacgagtatggattgcactggaatctagcaagtgacacactttatggtatg
ccagctggtgggttttatagagggaggtttcgccaccctgcccattgtctcaagagattc
agagaactattcctaggccacatatcttctgcaacagaaaatcccaacactgagaagaac
cattcagggggtgcaaaggctcttcttaaagtaaccgaggatcatgtccactggttgctt
gacgtggcaagtgatcaacctgacaacgagcttctccttcaaaagcacttcacagccata
ctttcgtctgtgtggagagcgcgttcgtgctatgaccatatccatggcccaatggcctct
cggaattcctgcagtctaggccgcggtcaaatttctgacaagctcaaaagagaacccgca
aggaggtttcttgcactatcaagccggagctccaagcttgtttccatggccctcaattcg
tcatttggaattgagccaagagagcatccagtgaattacttctggcagcaggttccaccc
actccgtcgatggaaaacaggaaaggttcagagacattggagattaggcttgtgcttggg
aatggaaaagatgattggggagaggggtttccctctaatattgacctgctcataagtggg
tcagatccagagcagccagctcctcaagaacagctgtccaaaaacttgctaccacaactg
tcctgccagattgcagaggttcgattcaggttagcatcaaactcttgctttgaaggtgag
ggctacagctgggcatcatccgcattccccatttcagaatttgtaaagcaccgatcctca
aagtcttccacactaggtaaacacaagctctcaactgatcctcacaagaccccaaaatca
aagctagccaagaccacgaacctcaatgaggacacacaatctactcttgctctagaaatc
catcacccacctgaaccatcaccagaagttccatccttattctcccctgggaatttgatt
cattggcccgactccggtattgaggatcttcatccactcatcgaaaattgggatgaccat
gcacctcagttttatgacactgtgttcttcgaggccctcgaggacttgtcttggctcgat
aatcccgggtttgagtga
DBGET
integrated database retrieval system
