Amborella trichopoda: 18432470
Help
Entry
18432470 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18432470 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18432470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18432470
03400 DNA repair and recombination proteins [BR:
atr03400
]
18432470
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
18432470
Messenger RNA biogenesis [BR:
atr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
18432470
DNA repair and recombination proteins [BR:
atr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
18432470
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18432470
NCBI-ProteinID:
XP_020521838
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MAAVLKKYFGYSVFRPHQKEIIEEVLKGRDTMVVMATGSGKSLCYQVPPLVTGKLAVVIS
PLISLMQDQVMSLKQRGIRAQYLASTQKDTSVISNAENGQYDILYMTPEKACCITDRFWS
KMLVVGLCLLAIDEAHCISEWGHDFRTEYKQLDKLRNFLPHVPFVALTATATEKVRVDII
NSLKMNNPYIAIGSFDRNNLFYGAKPFNRSDSFRKDLVGEISKYICNGGSIIVYCTTIRD
TNEVFESLQQAGIKAGFYHGQMTSKAREDSHRSFINDELHVMVATIAFGMGIDKPNIRCI
IHYGCPKSLESYYQESGRCGRDGLPSKCWLYYSRSDFGKADFYCSEVQNEDRRKAIVQSV
MEAQKYCMWTGCRRKFLLEFFGEQVSFTNCGNCDNCTDTNNEGKDISREAFLLLTCIKSC
RGRWGLTMPIDILRGSRSKRIVENHFDGLPLHGLGRDHSINWWKGLGDQLLAHGYLTEAV
QDVYRTVSVSPTGTQFLHASSADHQPPLILVLTHEMVEENQTGENPVKYEGDLNDLSALE
CQGLTKDEVHLYHKLLDLRMKLARNVGTAPYAICGDQTIQKISKIRPSSKARLANIDGVN
QHLVTTYGNHIIESICHLSQELKLSLNGEEPTLMAVAHKPYPSTQKRSNPAKVEAWRMWQ
EHGLSFQKIANLPERPAPIQEQTVISYVLEAAREGYKIQWSRFCKETGLTCEIFKDIQLA
VAKIGSKEKLKPIKEELPESVTYVHVKACLTMQELGLSANAILDVPELREDHATTKTRVC
NKEDIVRENLVLDFSNIDGEEPSVSPRVTENKELTRHRKQACGSDAPISEKPAKLRHVDI
DEISRNNRHKPDATMDSVLEWIGSHNGVGLSDILDHFKGSSRESVAAVLNGLEGEFLIYR
KGELYIVM
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgtcctcaagaaatattttggctattctgtttttcgtccacaccaaaaagag
atcattgaagaagtactgaagggaagagataccatggttgtcatggctactggaagtggg
aaatctctgtgctaccaggttcctcccttggttaccggaaaacttgccgtagtaataagc
ccattgataagtttgatgcaagaccaggttatgagtcttaaacaaagaggcatcagagct
caatatcttgcaagcacccaaaaggatacttctgtcatctccaatgctgagaatggtcaa
tatgacattttgtacatgactccagagaaagcttgctgtattactgataggttctggtca
aaaatgttagtagttggtctctgtctactggctattgatgaggcacattgcatttcagaa
tggggccatgatttcaggacagaatacaagcaattagataagctacggaactttcttcca
catgttccctttgttgccttgacagcaacagctaccgagaaggttcgagttgatattatt
aattctttgaagatgaataatccttacattgcgattggttcatttgatcgcaataatctc
ttctatggtgccaaaccttttaatcggtcggattcatttcgcaaagatctggttggtgaa
atatcaaaatatatttgtaatggaggctccattattgtatattgtacaacaatcagagac
actaatgaggtttttgagtccctccaacaagctggaatcaaggctggcttttaccatgga
cagatgacaagtaaagctcgtgaggattcacacagatcctttattaatgatgagctgcat
gtgatggttgcaaccattgcttttggtatgggcattgacaagccaaatataaggtgtata
atacattatggatgtccaaagagtctggagtcttactatcaagagagcggtagatgtggt
cgagatgggctgccatcaaaatgctggctctattattcaagaagtgattttggaaaggct
gatttttattgttcagaagtgcagaacgaagacagaagaaaagctattgtacaatccgtt
atggaagcacaaaagtactgcatgtggacaggttgccgaaggaagtttttgctggagttt
tttggggagcaggtctcgttcaccaattgtggtaactgtgataattgtacagacactaat
aacgaggggaaggatatatcaagagaagctttcttgctgttgacctgtataaaatcttgt
aggggccgctggggcctcactatgccaatagacattcttcgtggctcccggtcaaagcgg
attgttgagaatcattttgatggacttcccttacatggacttggtcgagaccattcaatt
aactggtggaaaggacttggggatcagttgctcgctcatggctatttgacagaggctgtt
caggatgtatatagaactgtaagtgtgagcccaacaggaactcaatttctccatgcttca
agtgctgatcatcaaccacctctaattttggttctgacccatgaaatggttgaggaaaac
caaactggtgaaaatccagttaaatatgaaggagatctcaatgacctatctgctctagaa
tgtcaaggacttacaaaggatgaggtacatctctaccacaagcttcttgatttgcggatg
aagttggcacgaaatgttgggacagctccatatgctatatgtggtgatcaaaccattcaa
aaaatttcaaaaataaggccatcaagcaaggctagactggcaaacattgatggtgtcaat
cagcacctggtaacaacatatgggaatcatatcatcgaaagtatttgtcatttgtcacaa
gaattgaagctttctttgaatggtgaagaaccaacactgatggcagtagcacacaagcca
tatccaagtacccaaaaaagatcaaatccagcgaaggttgaggcatggagaatgtggcaa
gagcatggtctttcttttcaaaagattgctaacttaccagagaggccggcacctatacaa
gaacagactgttatttcatatgttcttgaagctgcaagagaggggtataaaatccagtgg
agcagattttgtaaggaaactggattgacatgtgaaattttcaaagacattcaacttgct
gttgcgaaaattggctctaaagaaaaactaaagccaattaaggaagagttacctgaatct
gtgacatatgtccatgtcaaggcatgcttgacaatgcaagaattggggctatcagcaaac
gctatattagatgttccagagctacgtgaggatcatgcaacaaccaaaacaagagtgtgc
aataaagaggatatagtcagagaaaatttagtgcttgatttttcaaatatagatggtgaa
gagccttctgtttctccaagagttactgagaacaaagaattaactaggcatcgaaaacaa
gcctgtggaagtgacgccccaatctcagaaaaaccagcaaaactgcgacacgtggacatt
gatgagatatcacggaacaatagacacaagcccgatgcaaccatggactctgtgcttgag
tggattggaagccataatggagtgggtctatcagatatccttgatcactttaagggatcc
agcagagaatcagtggctgcagttttgaatggactagagggtgagttcttaatttataga
aagggtgaattgtacatagtaatgtaa
DBGET
integrated database retrieval system
