Amborella trichopoda: 18433072
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Entry
18433072 CDS
T02990
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
atr
Amborella trichopoda
Pathway
atr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18433072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18433072
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
18433072
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
HECT type E3
18433072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Arm
HEAT_2
Motif
Other DBs
NCBI-GeneID:
18433072
NCBI-ProteinID:
XP_006843232
UniProt:
W1P4U6
LinkDB
All DBs
Position
Unknown
AA seq
1661 aa
AA seq
DB search
METRSRSRKRAEALELMPADKRACNGASTSASCSRANEAPPKTLDHKMESSGSVSGEHVE
GVNGDRKDGGNPQQVSGGPVEGDNGNPNDGGNPQEDSDYASSSDSEEDQIPKFEYGNAGV
WECPYGNRKTLSDKIKRVVSSIVAGPKEHGSFSMLALLTELCDYLPFCMEDCFGSVSLDS
FVPVLVGVVKEEGEPDTMLLAVRALTHLCDVMPKSCAIVVRHNAVHAFCARLMAVQYVDV
AEQCLRALEKISRDHAAACLHSGAIMAVLPIVDFFSTGIQRVALSTAANICKKLDHQSYP
LVIDAIPILCNLLQYEDQKLVENVAICLIRIGEALKGSSDKLDELCKLGVIAQALHLISS
NSRIIVSKTTYSGLIGLLSILASGSSLAVKVLFDLNISHTLRDILACSDLAPSTVYSSSE
DLSSKKMLEVLNLLNVLLPPPSPGDEKLQSWFEKEKHFKDQPEFLRQFGLDILPILIQVV
GSGATVAICYSSLSVMNKLIYFSPSDMLLNMLEGTNISSFLGSVLRSKDLHVLIAALHIV
ELAMQKCHDTFQKLFVKEGVLYAVDALLLPEKLPDSHALLQQPTSSSVKPTRCLCFSSSV
TRSPSSEVRTCHVNKEMVCSIAKRIKDTYFHSVSKDANVAFTEMVQKMKDLCSELRDNAD
ISITKGTSARHERYLSNILESMVSELIGEDQLSTFEFIESGIVNSFIDYLYGGRKVDVAG
LSGHIEVFLKRFQKFAALTLSSPSPHCEVIPLTAMVRNLQSVLTSLEHFPVVSSHVPKPR
SSYSTIPGARSLICPCFRVHFVRAEGDATLSDFSSDVLAVDPLSSMESIEEYLWPRVCKS
GERKSVGGCVGSSEGSSSLTSPSIATHGTGHRNTSGNNLSASSSKTTEKVDLDTNITGAS
INHEGSAGVIEGSSQTFMEIQGNKSEISAAEIKTTVERVPAVSGGGVASFVRRSLISLMR
ALPFVAQANNTNRRKKSVAVTDVSATAQTVANKDLPSKEGKSGETPSSSDKKKLRGTPKT
EHSIPKLNFCLHGKVMNRSLSLYQAIIQQENVGICDINVGPKIWSDVYQITYGRATKPCI
VDHEGEFQIPFSCNNGMFLGHLQYFRSILSEGLSCELDKSDPIYNVLLLLKVLEGLNRFS
FHIKAHNNSSTFAEGRVDKFDALKATLPSIPQKEFVSSKLTEKLEQQMQDPLAITDHGLP
SWCRQLITSCPFLFSFESKSKYFQLAASGTSRVPQLPSTMNSGRWSILPHDIERLRSSHL
TRRKFSISRRHILDSASKIMSSCSSGKIIVEVEYEGEVGTGLGPTLEFYTLVSREFQKVG
LGMWRDTTMQFHAEGSSQVQDSGFVVALMGLFPCPWSSSSNSSNGIQFSEVIKKFTLLGQ
IVAKALEDGRLLDLPFSRAFYKLILGEDLDLYDIQLFDAEFGKTLQEMKAIVDRKRYLES
VPCRNKRLISSLSFRDTKIEDLCLDFTVPGYSDYILKIGPQYKQVNIYNLDEYVSSMVDA
TVGSGISRQVEAFKSGFNQILPLEYLKIFAEDELERLLCGEINIWQSDNLLDEIKFDHGY
TASSPPVINLLEIIQEFGSDQRRAFLQFVTGAPRLPPGGFAALNPKLTIVRKHFGDGTAW
DLPSVMTCANYLKLPPYSSKDQMRERLLYAITEGQGSFHLS
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgaagtagaagcaggaagagagctgaggccttggagttgatgcctgctgat
aagagagcctgcaatggtgcttcgacctctgcttcgtgctcgagggctaatgaagcccca
cctaaaaccctggatcacaagatggagtcgtcgggttcagtctctggtgaacatgtagaa
ggagtcaatggggaccgaaaagatggaggaaatccacagcaagtctctggtggaccagta
gaaggagacaatgggaacccaaacgatggaggaaatccacaagaagactctgattatgcg
agttcaagtgattcagaagaggatcaaatccccaaatttgaatatggcaacgcaggtgtt
tgggagtgcccttatgggaatagaaaaaccctcagcgataagataaagagggtggtttcg
agcattgttgcaggaccaaaagaacatgggtcttttagtatgttggctttgctaactgag
ctctgtgactatttgcctttttgtatggaggactgctttgggagtgtttctttggattcg
tttgttccagtgctggttggggtggtgaaggaggagggggagcctgataccatgctttta
gcggtgagggccctcacccacctttgcgatgtgatgccgaagtcatgtgcgatagttgtg
cgccataatgctgttcatgctttctgcgctcggttgatggcagtgcagtacgtagatgtt
gcggagcagtgcctaagggctcttgaaaagatttctcgggatcatgcagctgcctgccta
cattctggggcgatcatggctgtgttgcctattgtggacttcttctcaacaggcattcag
agagtagctctatctactgctgcaaacatatgcaagaaactcgatcatcagtcatatcca
cttgtcattgatgctattccaatattgtgcaatctccttcagtatgaggatcagaagctt
gttgaaaatgtggctatttgcctcataagaataggagaggctttgaaaggttcatcagat
aaattggatgagctgtgcaagcttggggtaattgcccaagcacttcatctgatttcctca
aacagccggatcatagtcagtaaaacgacatactctggtttgattgggctgctttccatt
cttgcttctggttcttcccttgcagtcaaggttctctttgacctgaatatcagccacaca
ttgagagatattctggcctgttctgaccttgcacctagcacagtctattcttcttctgag
gatctttcttcaaagaagatgcttgaagttctgaatttactaaatgtgcttctcccccct
ccatctcctggagatgaaaagcttcagtcttggtttgagaaagaaaaacattttaaggat
caacctgaatttctgcgtcagtttgggctagacattcttcctatcttgatccaggtggtt
ggatctggggcaactgtggctatttgttacagtagcctttctgttatgaacaaattgatt
tatttcagcccatctgatatgctacttaatatgcttgaaggcacaaatatatcaagcttt
ctgggtagtgtgcttcgctcgaaggatctccacgtactgattgctgctcttcatatagtt
gagctagccatgcagaaatgccatgacacttttcagaagttatttgtaaaagagggtgtt
ctatatgcagttgatgcacttctcttaccagagaagttacctgattctcacgccttgctt
cagcagccaaccagctcaagcgtgaagcctacaagatgtctttgttttagttccagtgtc
actaggtctccatcatctgaagtacgaacctgccacgtgaataaggagatggtttgctct
atagccaagcgtataaaagacacctactttcattcagtatcaaaagacgcaaacgtggca
ttcacagagatggttcagaaaatgaaagatttgtgctcagagttgagagataatgcagat
atttccataactaagggcactagtgctcgacatgaaagatacttgtctaatattttggag
agtatggtatccgagctcattggagaggatcaactgtctacttttgaattcattgaaagt
gggatagtgaactcattcatagattatctatatggggggagaaaagtggatgttgctggg
ttatcaggtcatattgaagtgtttctgaagagattccagaagtttgctgcacttactttg
tcgtcacctagtccccactgtgaggtcattcctctcacagccatggttcggaacctgcag
tctgtgttaacttctttggagcattttcctgttgtctctagtcatgttcctaagcctaga
agttcttattctaccattccaggtgcgcggagcctaatctgcccgtgtttcagggttcac
tttgtgagggcagaaggggatgcaactctctctgatttctcatctgatgttttagcagtt
gatcctctttctagtatggagtctatcgaagaatatttgtggcctcgagtctgcaaaagt
ggagaacgaaaatctgtgggtggttgtgtgggctcatccgagggttcctcatctctgact
tcaccttctattgctacgcatggaactgggcatcgaaatacatcaggaaacaacttatct
gcaagttcgtcaaaaactactgagaaggttgacttagacactaatatcactggagcatca
attaatcatgaaggaagtgctggagtcattgaaggatcatcacagacgtttatggagatt
cagggaaataagtctgaaatttctgctgctgaaattaaaacaaccgtcgaaagggtacct
gcggtttcaggtggtggagttgcatcctttgtacgacgatctctaatttctctaatgcga
gcactgccatttgtggcacaggcaaacaataccaatagaagaaagaaatcagttgctgta
actgatgtttctgcaactgcacaaactgtcgcaaataaggacttgccatccaaagagggc
aaatctggagaaactccttcatcatctgacaaaaagaaattacgaggaaccccaaaaact
gaacattccatccctaagctgaacttctgcttacatgggaaagtgatgaatcggtcactt
agtctttatcaagcaattattcaacaagaaaatgtggggatttgcgacataaatgtgggt
cctaaaatttggagtgatgtatatcaaatcacatatggaagggctacaaaaccatgcatt
gttgatcatgaaggggaattccaaattccatttagttgtaacaatgggatgtttttggga
catcttcaatatttccgaagcatcttaagtgaggggctttcttgtgaactggataagtca
gatcccatttataatgtgttgttattgctaaaagttctggaagggttgaataggttctca
tttcacataaaggctcacaacaacagtagtacttttgcggaagggagagtagacaaattt
gatgccttgaaggccactctcccttcaattccacaaaaggaatttgtgagcagcaagtta
actgagaaactagaacagcagatgcaggatccactagcaattactgatcatggcttgcct
tcctggtgtagacagttaatcacttcatgcccattcttattttccttcgagtcaaagagt
aaatacttccagttggctgcatctggcacttcacgagtgccacagttgccttccactatg
aactcgggtcgttggagcatacttccacatgacattgagagattgcgttctagtcatttg
acgcgaagaaagttttccattagccgaaggcacatactggattcggcttcaaaaattatg
agctcatgttccagtggtaagattattgttgaggttgagtatgagggtgaagtgggtacc
ggtcttggtccaacattggagttctatactttagttagtcgtgaatttcagaaggttgga
cttggcatgtggagagacaccacaatgcaattccatgctgaaggatcatcccaagttcag
gattcgggctttgtggttgcccttatggggttattcccatgcccatggtcaagttcatca
aactcctcaaatgggatacagttctctgaagtgattaaaaaattcactctattggggcag
attgttgcaaaagcacttgaagatggaaggcttctggaccttcccttctcaagagcattc
tataagctcattcttggggaggatcttgatttatatgatatccagttgtttgatgctgaa
tttggaaaaaccttgcaagagatgaaggctattgttgatcgtaaaagatacttggagtct
gtaccatgcaggaataaaagattaatttctagtctgagttttcgggacactaagattgag
gacctctgtcttgattttactgttcctggttattctgattatattcttaaaatcggacct
caatataaacaggtaaatatttacaatttggatgagtatgtgtcatcaatggtggatgca
actgtgggaagtgggatttcaaggcaagtggaagcttttaaatcaggatttaaccagatc
ctccctttggaatatcttaaaatatttgctgaagatgaactcgaacgattgctctgtggt
gaaatcaacatttggcagtctgacaatcttttggatgaaatcaagtttgatcatggctac
acagcaagcagtccacctgtcattaacctgctggagatcattcaagaatttggaagtgat
cagcgtcgagcctttttacaatttgtgactggagcgccccgccttccaccaggaggcttt
gcagctctgaacccaaaattgacaatcgttcgcaagcattttggtgacggtactgcttgg
gatttgccaagtgtgatgacctgtgccaattatttgaaacttcctccttattcatccaag
gaccaaatgagggagaggctgctatatgccattacagaagggcagggttcgttccacctc
tcttag
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integrated database retrieval system
