Amborella trichopoda: 18433413 Help Entry 18433413          CDS       T02990                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism atr  Amborella trichopoda Pathway atr03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:atr00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     18433413  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:atr03021]     18433413    03019 Messenger RNA biogenesis [BR:atr03019]     18433413 Transcription machinery [BR:atr03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      18433413 Messenger RNA biogenesis [BR:atr03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      18433413     U7-dependent histone pre-mRNA processing factors      18433413 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 Zap1_zf1 Motif Other DBs NCBI-GeneID:  18433413 NCBI-ProteinID:  XP_006843566 LinkDB All DBs Position Unknown AA seq 1327 aa AA seqDB search MVGVMASCPRDKALSLFNSAKFSIEIPSKLEPLRQLQEIVVYRDPTLLVEFVPHLMELQS EHFSPIRKFLAEMIGEIGLKHRQFLPEMVPVLISFLKDDTPAVAKQAITTGTNLFRSTLE DVALQALPDSLRESSWTCMLNFKEAVYPVAFQSGSEGVRSLAVRFVEATILLFTPDPNAS SRPVPPEGGGKSEGFSISWIQGGLPLLAAADLALEASKNLGMLLDLLRSPSVRGLPYSVI FVLINSLSTIARKRPAFFGRILPVLLVLDPSTVVIKGALVSNVRHALKNAFLACLKCTHP GAAPWRDRLVNALKSLNAGDSSERALGQFDNVPGNLNHQTGDPHAPKDGTLSMHVSDATP IDAGRKRSVAEDAGDLAHGDDISGKRVRHVALVSQESPMQVIQPSPEKSQESSPLNMAQS STGDGESGPVQQLVAMLGALVAQGESAVNSLEVLITSISSDLLAEVVIYNMRFLPSTRPS PESGEEETLTSCNISFLISNASAEIKQLSGTEHTMSLLSALPQIASLLDMKPLPSSSSAD LTEERKPPIPMDLSIPASNTSTTDVAVLPRDAPASSIVPISDEEVNQLAVLETIEVGALQ TGIPGLDDVPSVEELKEALDSSLSSSVDLVSGSSAKQESSSDHMSYDKSEALSPRASSGD MSWASSTASAPIVLPSSYLLQKVPPLVVALTDEQKDHIQKLAYVRIIEAYKQIAIAGGLN VRFSLLAYFGGECPLEFDSLGLLQRHILADYLNHEGHELTLHVLYRLYGEAEREQDFVSS SSASSTYEIFLLTVAETLRDSLPAADKSLSRLFGEVPYLPKQALKMLESLCSPGNGKDGK DLQAGDRVTQGLSAVWSLILSRPPIRDLCLNIALQSTVHHMEEVRMKAIRLVANKLYPLS FISQKIENFATEMLRSVVNGNAGGESTNIDRSNLSGGQIDSTEGVPKGGQLLKEAGLATA DISSNINDSSSAKTLSSSSISEAQRCMSLFFALCTKKRSLLREIFLNYGSAPDAVKQAVH RHIPILIRTIGSSPELLSILSDPPTGSESLLMQVLHTLTDGTIPSPDLIYTVKRLYDSKL KDVGILIPIVSSLPKDELLSLFPQLVDLPLEKFKAALVRILKGSPNMGPVLTPAEVLIAI HEIDPERDGIPLKKVTDACSACFEQRVVFTQQVLAKVLNQLVEQIPLPLLFMRTVIQTIG SFPALVDFIMDILSRLVSKQIWKYPKLWVGFLKCAFQTKSYNVLLQLPAAQLENALTRTP ALRQPLVAHANQPNIRSSLPRSTLVVLGLAQDTQSSSQAQPSLSSADAGTSNTQALTDTT KEAKTVG NT seq 3984 nt NT seq  +upstreamnt  +downstreamnt atggtcggcgtcatggcctcttgtcctagggacaaggccctctctctcttcaactccgcc aagttctcgatcgagattccttccaagctggagccattgaggcagctccaagagatcgtg gtttacagagaccccactttacttgtggagttcgtgccgcatctcatggagttgcagagc gagcacttcagtcccattcgcaagtttcttgcagagatgattggagagattgggttgaag cacaggcaatttttgcctgaaatggtacctgttttgatatcatttttaaaggatgatacc cctgcagttgcaaaacaggctattactactggaacaaacttatttcgaagtacattagag gatgttgcacttcaggctttacctgacagtcttcgtgaatcatcatggacttgcatgtta aacttcaaggaagcagtatacccagttgcatttcagtctggaagtgagggagtgagatca ctagcagtgaggtttgttgaagcgacaattctccttttcacacctgatcctaatgcgtcc tcacgacctgtgcctcctgaaggtggtggaaaatcggaaggtttcagtatatcgtggata cagggaggtcttcctctgcttgcagccgcagatttggcattagaagctagcaaaaacttg gggatgttgttggatttgcttcggtctccatctgtaaggggactcccttactcagttatt tttgtcctaataaatagtctttcaacaatagcaaggaagaggccagcattttttggacgc attttgcctgttttgcttgttttggatccttcaacggtggttataaaaggagcactggtt tctaatgtacgtcatgcactaaaaaatgcattccttgcatgtttaaagtgtacccatcct ggtgctgcaccgtggcgggatcgactggtcaatgcgttgaaatcactgaatgctggagat tcatccgaacgtgcccttggtcaatttgacaatgtaccaggaaaccttaaccatcagact ggagatccacatgctccaaaggatgggaccctctcaatgcacgtatctgatgctacaccc atagatgcaggaagaaagagatcggtagcagaagatgctggagacctggctcatggtgat gatatctctggaaaacgagtcagacatgttgctcttgtctctcaagagtcacctatgcag gttattcagccaagtcctgagaaatcacaagaaagttctcctcttaatatggctcaatct tcaactggggatggagagtctggccctgttcagcaactagttgctatgcttggtgctttg gtggcccaaggcgagagcgctgttaattctcttgaggttcttattacaagcatttcttca gacctactagctgaagttgtaatatataacatgcgttttcttccatctactcgtcccagt ccagagagtggagaggaggagacactcacctcatgtaatatttccttccttatcagcaat gcctctgcagaaataaagcaattatccggtaccgaacatacaatgtcattgttgagtgca ttacctcaaatagcctctcttttagatatgaagcctctgccatcttcaagtagtgctgac ttgactgaagaaaggaagccaccaatcccgatggatttgtccatacctgcttcaaacact agcactacagatgtagctgtattaccaagagatgctccagcatcttctattgtgccaatc tctgatgaagaagttaaccaattggctgtactcgagacaattgaagttggggctttgcag actggaattcctggcctagatgatgttccatccgttgaagaattgaaagaagccttagat agctcactttcttcttctgtggacttggtctcagggagttcggcaaagcaagaatcctca tctgatcacatgtcatatgataagtctgaagcattaagtccaagggcatctagtggagat atgagctgggcatcttcaaccgcttcagcacccattgtcttgccaagctcatatttactc cagaaggtgccacctctagttgttgccttgactgatgaacaaaaagatcacatacagaaa ttggcatatgtgcgtatcattgaggcgtacaaacaaatcgccatagctggaggattgaat gttcgcttttccttgctagcttattttggtggtgagtgtcccttggagtttgactcgctg gggcttttgcaaaggcatatattggccgattatttaaatcatgaggggcatgagttgact ttgcatgttctctatagactatatggagaggcagaacgtgagcaggattttgtctcatca tcatctgcaagctcaacatatgaaatattccttttgactgtggctgaaacacttcgagac tctcttcccgctgccgacaaatctttaagcagattgtttggtgaagttccttatctgccc aaacaagcattaaagatgctggaaagcttgtgttctcctggaaatgggaaggatgggaag gacttgcaggctggcgatcgagtaacacagggcctcagtgctgtatggagcttgatattg tcaaggcctcccattagagatttgtgcttgaatattgcattacagagcacagtccatcac atggaagaagtacggatgaaagctatacgtttggtagctaataagctctatcctctttca ttcatttcgcaaaagattgaaaattttgccacagaaatgctgcgctcagttgtaaatggt aatgctggtggggaaagcacaaatattgacagatccaaccttagtggaggacagatagac agtactgagggtgttcccaaaggggggcagctgctgaaagaagcaggcttggccactgca gatatctcgtctaatatcaatgactctagttctgctaagactttatcatcctcgtcaatc tcagaggcacagaggtgcatgtctctctttttcgcgctatgcaccaagaagcgttctctg cttcgagaaattttcctaaactatggaagtgcaccagatgctgttaagcaggcagttcat cgccatattccaattttaattcgtacaataggctcgtctcctgaattgctttcaatttta tcagatcctccaacaggaagtgaaagccttctcatgcaggttttgcacacactgactgat ggaacaattccttcaccagatttaatatatacggtcaagcggttatatgactcaaaattg aaggatgtggggattcttataccaatcgtgtcgtccttgcctaaagacgagttattatct ttattcccccagcttgtcgatctaccacttgaaaaatttaaagctgcccttgtgcgtatc ctaaagggatctccgaatatgggtcctgttcttacacctgctgaagtgctaattgctatc catgaaatagatcctgaaagagatggaattccattgaaaaaggtgacagatgcatgttct gcatgctttgaacagcgggtggtgttcacgcaacaagttctcgctaaagtcttgaatcaa cttgttgaacagattcctctgcctttgttattcatgcgtacagttatacaaactattggt tcttttcctgcactggtggactttataatggacattctgtctcgcctagtaagcaagcag atctggaaataccctaaattatgggtgggattcttgaagtgtgcatttcaaacaaaatca tacaatgttctactgcagctaccagctgcacaactagaaaatgcactgaccagaactcca gcactaagacaacccctggttgctcatgctaaccaaccaaatatccggtcgtcactaccc aggtcaaccttagtggttttgggccttgctcaagatacccaatcatcaagtcaggcccaa ccaagcctatcctctgctgatgcagggacctccaacacccaggcattaacagatacaact aaagaagcaaaaactgtcggttga

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