Amborella trichopoda: 18433612
Help
Entry
18433612 CDS
T02990
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
atr
Amborella trichopoda
Pathway
atr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18433612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18433612
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18433612
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
HTH_CHD6-9
Motif
Other DBs
NCBI-GeneID:
18433612
NCBI-ProteinID:
XP_006843758
UniProt:
W1PBV8
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MEEASLENKLPELKLDAKQAQGFVSFFRRLPQDTKAVRFFDRRDYYTAHGDNANFIAKTY
YHTSTALRQLGSGPDAISSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLSKTGT
PGNLGSFEDVLFANNEMQDTPVTVALFPSFRDNECTVGLAYVDLTKRILGMAEFLDDTQF
TNVESALVALGCKECILPIEKNSAEIRVLHNALARCSVLLTEKKKSEFKSRDLVQDLGRL
VKGSIEPVRDMVGGFEYASGALGALLSYTDLLADDSNYASYTMHHYKLGAYMKLDSAAMR
ALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVNEINCRLDLVQAFVE
DTELRQDLRQHLKRISDIERLMRSLEKRRATLQHVVKLYQSTIRLPYIKSAMERYEGEFS
PFIRERYLDPLDYWTDDDHLNRFIALVEVSVDLEQLANGEYMIAAGYDSNLAALKSERDA
VEAQIHELHKQTAYDLNLPLDKALKLDKGTQYGHVFRITKKEEPKIRKKLSTHFVVLETR
KDGVKFTNTKLKKLGDKYTNLLEEYTSCQKELVSRVVQTAATFSEVFEYVAGLLSELDVL
LSFADLATSCPIPYVRPSITSPDIGDIVLEGCRHPCVEAQDGVNFIPNDCALVRGESWFQ
IITGPNMGGKSTYIRQVGVNVLMAQVGSFIPCDRASISVRDCIFARVGAGDCQLRGVSTF
MQEMLETASILKGATNKSLIIIDELGRGTSTYDGFGLAWAICEHLVGVTRAPTLFATHFH
ELTALANEGIDNHEHRRMPLNGVANFHVSAHIDSSSRKLTMLYKVDQGPCDQSFGIHVAE
FANFPESVVALAREKAAELEDFSPTTASSNDTKEEVGAKRKHPCSPDDVTRGAARAHQFL
RDFSQLPLEGMNYSQALQEVAKLRCSLEKDALDNPWLQQLF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagcatccctggaaaacaagcttcccgagctcaagctagatgcaaaacaagcg
caagggtttgtgtctttcttcagaagactacctcaggacaccaaggctgtacgcttcttt
gatcgccgtgactattatactgcccatggagataatgcaaatttcattgccaagacatac
taccacacctctactgctcttcgacaattgggtagcggccctgatgccatttcaagtgta
agtgtaagcaaaaatatgtttgaaaccattgctcgtgacctacttcttgaaaggaccgac
cacacattggagctctatgagggcagcggatcaaattggaggctctcaaaaacaggaaca
cctggaaaccttggcagttttgaagatgttctatttgccaacaatgagatgcaagatacc
cctgtgactgttgctctatttcctagctttcgagacaatgaatgcactgttgggttggct
tatgttgatttaaccaagagaattctaggcatggcagagtttttggatgatacccaattc
acaaacgtggaatcagcattggttgctcttggttgcaaagaatgcatccttcccatagag
aaaaattctgctgagattagggtcttgcacaatgcccttgccagatgtagtgtgctctta
actgagaaaaagaaatctgaattcaaatctagggatttggtacaagaccttggtcgactt
gtcaaaggttctattgaaccagttcgggacatggtcggtggttttgaatatgcctctggt
gccctaggtgcattgctatcttatactgatctccttgcagatgatagcaactatgcaagc
tatactatgcatcattataagctgggagcttatatgaagttggattcagctgcaatgagg
gcattgaatgttctcgagagtaaaaccgacgcaaataagaattttagtttgtttggtttg
atgaataggacatgtacggcaggcatgggtaagagattgctaaacaggtggcttaaacag
ccattgttggatgtgaacgaaattaattgtagactggatttggttcaggcttttgtggag
gatactgagctacgccaagatcttcgacagcatttgaaaaggatttcagacattgagcga
cttatgcgtagtcttgagaagaggagggctacgttgcagcatgtagtgaaactttatcag
tcaaccattagacttccttacatcaaaagtgccatggagcgttatgaaggggagttctct
ccttttatcagagagaggtacttggacccattggattattggaccgatgatgatcacctg
aacaggttcatagcccttgtcgaagtttctgttgatcttgaacaacttgcgaatggtgaa
tatatgattgcggctggatatgattcaaacttagctgcactgaagagtgaacgagatgca
gtagaagctcaaatacatgagttacataaacaaactgcatatgatttgaatcttcctctt
gataaggctctgaagttagacaagggcacacaatatggacatgtgttcaggatcacaaag
aaagaagagccaaaaattagaaaaaagctcagcacacattttgttgttcttgagactcgc
aaggatggggtcaaatttacaaacacaaagttaaaaaagttgggggacaagtacacaaat
ttactggaggagtacacaagttgtcaaaaagagcttgttagtcgagttgttcagactgca
gcaacattctctgaggtgtttgaatatgtagctgggctgctttctgaattggatgttttg
ctcagttttgctgatcttgctactagttgtccaataccttatgtcagaccaagcattact
agcccagatataggggatattgtactggaagggtgcaggcatccttgtgttgaagctcaa
gatggggttaatttcataccaaatgattgtgctcttgtgaggggggaaagttggttccaa
attatcactgggccaaacatgggggggaagtctacttacattcgtcaggttggtgtgaat
gtgctaatggcacaagttggaagtttcattccatgtgatagagcaagcattagtgttcgt
gattgcatttttgctcgtgtgggtgctggagattgccaattgcgtggagtttcgactttc
atgcaggaaatgctggaaactgcatcaatattaaaaggagcaactaataaatcactgata
attattgatgagctggggcgtggaacatctacatatgatggatttggtttggcttgggca
atttgtgaacaccttgtaggggtcaccagagctccaactttatttgcaacacattttcat
gaattgactgcattagctaatgaaggcatcgataatcatgagcaccgacggatgcctctt
aatggtgtggcaaactttcatgttagtgcacacattgattcctctagtcgcaagttaacc
atgctttacaaggtggatcaagggccgtgcgatcaaagttttggaattcatgttgctgaa
tttgcgaacttccctgaaagtgttgttgctttagcgagagaaaaagctgcagagttagaa
gacttttcaccaactacagcttcctcaaatgacacaaaagaggaggtcggggccaaacgc
aagcacccttgcagtcctgacgatgttacaagaggtgctgctcgggctcatcagtttctg
cgtgacttctcacaactacctttggaagggatgaactacagtcaagctctacaagaggtc
gctaagttaaggtgcagcctggagaaggatgccttagataacccttggcttcaacagttg
ttttag
DBGET
integrated database retrieval system
