Amborella trichopoda: 18434010
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Entry
18434010 CDS
T02990
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18434010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18434010
03110 Chaperones and folding catalysts [BR:
atr03110
]
18434010
03029 Mitochondrial biogenesis [BR:
atr03029
]
18434010
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atr04147
]
18434010
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
18434010
Messenger RNA biogenesis [BR:
atr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
18434010
Chaperones and folding catalysts [BR:
atr03110
]
Heat shock proteins
HSP60 / Chaperonin
18434010
Mitochondrial biogenesis [BR:
atr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
18434010
Exosome [BR:
atr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18434010
Exosomal proteins of other body fluids (saliva and urine)
18434010
Exosomal proteins of breast cancer cells
18434010
Exosomal proteins of colorectal cancer cells
18434010
Exosomal proteins of bladder cancer cells
18434010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
18434010
NCBI-ProteinID:
XP_011623265
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MASSPITPVSAIYCARYSNSTHSNKTWLLCMQRYPTITAMSKEIYFNHDGSATKKLQAGV
DMLANLVGVTLGPKGRNVVLENKYGPPKIVNDGVAICKEIELEDTLENIGVKLVRQAAAK
TNDLAGDGTTTSIILAQGLIAEGLKVIAAGANPVQISRGIEKTTKALVSMLKLMSKEVED
HELEDVASVSAGNDYEIGSLIADSIRKVGRMGMVKIEKGKSTVNSLHVVEGMHFDRGYLS
PYFVTDREKMSVEYENCKLLLVDKKIAKPKEMFNLLEAAIREKYPILIIAEDIEQEALAP
VIRNKLRGSLKAAAIKAPAFGERKSHCLDDIAILTGGTVIRDDMGLSLGKAKKEVLGSAT
KVVITKDSTLIITDGTTKEAVNTRVSQLKILMENSEEKFDKKILNERIARLSGAVAIVQV
GAQTEVELKEKTLRVEDSLNSTRAAIEEGIVVGGGCTMLRLSLKVDTIKKSLENEEQKVG
ADIFRKALVYPMKRIAENAGINGNVVVEKVMLTEDVRYGYNASKGIYEDLMAAGIIDPSK
VVRCCLEHAASVAKTFLMSDVVVSEIKEPEAVRMPLQSPGMGLRPRRSSLINSAKALAGS
TVLSSPVPHLPKQS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttctccaataactccagtgtctgcaatttattgcgctcgatattcgaattcc
acccattccaataaaacatggcttctttgcatgcagagatacccgacaataactgctatg
tccaaagaaatttacttcaaccatgacggttcagccactaagaaactccaggctggtgtg
gacatgctagctaacctagttggagtcacattgggaccaaaaggaaggaatgtggtgtta
gagaacaagtatggtcccccaaagattgtcaatgatggagttgctatttgcaaggagatt
gagttggaagacaccttggagaacattggtgtaaagctagtaagacaagctgctgcaaag
accaatgatcttgctggagatggcactacaacctccattattcttgcacaaggactaatt
gctgaaggcttgaaggttattgctgctggtgcgaatcctgttcagattagtagaggaata
gagaaaactaccaaggccctggtttccatgctcaaattgatgtctaaagaggttgaggat
cacgaacttgaggatgttgcctcagtgagtgcgggaaatgactatgaaattggatcactg
atagctgattccataagaaaagtaggaagaatgggtatggtaaaaatcgagaaagggaaa
agcactgttaacagcctgcatgttgttgagggaatgcattttgatcgcggttatttgtca
ccttattttgtcacagatcgtgaaaagatgtcagtagagtatgagaattgcaagttgctt
ttggttgacaaaaaaattgccaagccaaaggagatgtttaatcttttggaagctgcaata
agggagaagtatccaattttgataattgcagaagacattgagcaggaagctttggctcct
gtaattaggaacaaactcaggggttcattgaaggcagctgccatcaaagctcctgcattt
ggggaacggaagagccattgcttagatgacattgctatcctgactggaggtactgtaatc
agagatgacatgggtctcagccttggaaaagccaagaaggaagtattaggatctgccaca
aaggtggttataactaaagattctacattgataattactgatggaaccactaaagaagct
gtaaacacgagggtttctcagcttaaaatcttaatggagaattctgaagaaaaattcgac
aagaaaattctgaatgagagaattgccaggttatctggtgcagttgctattgtccaggtc
ggagctcagacagaagtagaactcaaggagaaaacactgagagtagaagattccttgaat
tccactagggcagctattgaagaaggcatagtggttggtggtggctgtaccatgttgaga
ctatctttgaaggtggataccatcaagaaatctttagaaaatgaagagcaaaaggtgggt
gccgatatattcagaaaggctttagtctatcctatgaaacggattgcagaaaatgcaggc
atcaatgggaatgttgttgtagagaaggttatgttgacagaggatgttagatatggatat
aatgcttctaaaggcatttatgaagatttgatggctgctggaatcattgatccatcaaag
gtggtaaggtgttgtttggagcatgctgcttctgttgcaaagacctttcttatgtctgac
gtggttgtttctgaaataaaagagccagaggctgttagaatgccattgcaaagtccaggc
atgggactccgtcctaggagaagcagtctgattaattctgcgaaagcactagctggatcg
acagttctctcatcacctgtacctcaccttccaaaacaatcatag
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