Amborella trichopoda: 18434388
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Entry
18434388 CDS
T02990
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
atr01009
]
18434388
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18434388
Enzymes [BR:
atr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
18434388
Protein phosphatases and associated proteins [BR:
atr01009
]
HAD phosphatases
Fcp/Scp phosphatases
18434388
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
18434388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
ARM_CPL3
BRCT
PTCB-BRCT
DUF6617
Motif
Other DBs
NCBI-GeneID:
18434388
NCBI-ProteinID:
XP_006844522
LinkDB
All DBs
Position
Unknown
AA seq
1418 aa
AA seq
DB search
MHFGRYYRFSLNPKEKESLTRMSQNQEPIEDMEEGEISDQDVVQELFMDDLNQEEINTTD
SRVSNDLNQDSSVFLEESKKQNQWGFNLLKLPHSSGIYGTDLYNFAWAQAVQNKPLEGIG
LKDFRPELEYQDKYMGYGIDNEDLIDEKAHRKGRLEQNKDYRNSDAMNFMEEAEDNHREK
EGAIEADNRRDKGDEIEEGELEEGEIELDSPLSGSHLLENSLQSEKKKEGSPERKNIDLD
ILPISKNDYDELRSSLMEKELEMKIASIGEMLKAVTIQDANKSIRAVCYHLKNSMETMHQ
IATQVKSLSKNRITDQLDFFLHLAFAGIQSSYSVYRNTRFRLQEEDTNAFLRLLKFVKFQ
THTLFNRRQMEELEGMLFWVESAVVDRQKETQANFECVTNQGRENMMKNQDNPMINFFPS
VITDGGSTHRTGILPKPFAQNLVPNNPDFMVNGDPVFNSFDNGTGGDSKPRKTQENLSVT
DKKEMNNNKLNVQGGNELSLSMPIFKDPSNLQGNQPSLLPFSKNGTGSRHVECEDTVYPS
VNDALKAFSTYQQKFGRTSFLSNNKLPSPTPSDECEGEDTDAHGEVSSTGESKTPEPDRV
SSSGEFKIAEPVTDVVQTSGRNASNSLLQKSEPITSNNLHGLNPSISFQSIQVKEVMPEG
NSAFGSNPLIKSQPRRSRDPRLANTNSEAGSSFDLNKHPASIDPGNVKPIQPILNGGILG
SRKTTIVEEAVLDGHSLKRQRGLSYGGQVIPGRGGWLEENTPGVVPSSKEQRVEIGDSMK
ERPVKPENGAVLGSDMKLDGNSNANVSTAVRPGMGPGSSNMGGAMLPNLGNIASLPDLIK
DIVTNPNMILQLIQKEQQRLGAFQKPVNPLPQNLSSSSSTCTMMPSSTGAPLKSSDVQQR
PALQPQMPPQTASMSFMKEDVGKPRMKPRDPRRILHTNLIPTNVSSTPQPKPNGTDPSTI
HTGTITPSSRESNMPVNPTSSLPLSTNLPDITQPFTKKLMNIADILSGKQVANPLGLLPQ
VVSQPAQLKTAMEDGLVPPNIVMGTSLPEKTAVDSLESENPWGDVNHLLEGLDDKQRQAI
QKERARRIEEQNKMFSARKLCLVLDLDHTLLNSAKFIEVDQVHDEILRKKEEQDRLKPRR
HLFRFPHMGMWTKLRPGIWNFLERASKLYELHLYTMGNKVYATEMAKVLDPTGSLFSGRV
ISKGDDGDPFDGDERLPKSKDLDGVLGMESAVVIIDDSAKVWPHHKHNLIVVERYTYFPC
SRRQFGLHGPSLLEIDHDERPEDGTLASSLAVIEKIHESFFSNRSLNEVDVRDILASEQQ
KILKGCKVVFSRVFHVGLANPHLHPLWQTAEQFGAICTNQIDDEVTHVVAISLGTDKVNW
AISTGRYVVHPGWLEASALLYRRANERDFSIMPPPPSS
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgcactttggtcgatattaccgattttctctcaaccctaaggaaaaggaaagtctcaca
agaatgtcacaaaatcaagaaccgattgaagacatggaggaaggagagatatcagatcaa
gatgttgttcaggaactatttatggatgatctcaaccaagaggaaataaatactactgat
tctagggtttcgaatgatttaaaccaggattcctcagtctttctagaagaaagtaaaaaa
cagaatcagtggggtttcaatttgttaaaattaccacattcttcggggatttatggcacc
gatctttacaattttgcctgggcacaggctgttcagaataagccgctagagggcattgga
ttgaaggatttcagacctgagcttgaataccaggataaatatatgggttatggaattgac
aatgaagacttgattgatgagaaagctcaccggaagggaagattagaacaaaacaaggat
tacagaaattcagatgctatgaattttatggaagaagctgaagacaatcaccgggagaaa
gaaggtgcgattgaagctgacaatcgtcgggataaaggagatgagattgaggagggtgaa
ttggaagaaggggagatagaattagattctcctttgtctggttctcatctccttgaaaat
tctttgcaatctgaaaaaaagaaagagggatcaccagagagaaaaaatattgacttggat
attttgccaatttctaagaatgactatgatgagctgaggtcaagtttaatggagaaggag
ttggagatgaagatcgcttcaattggagagatgctaaaggcagttactattcaggatgct
aataagtcgatacgagcagtgtgttatcatttgaagaattctatggaaactatgcatcag
atagctacccaagttaaaagtctatcaaagaatagaattacagatcaactggatttcttt
ctacatcttgcttttgcgggtatccaatcttcatattctgtttatcggaatacacgattc
aggctgcaggaggaagatacaaatgctttcttaaggctgctgaaatttgtaaaattccag
actcatactctatttaaccgtagacaaatggaagagttagaagggatgcttttctgggtt
gaatcagctgtagtagatcgacaaaaagagacacaagctaattttgaatgtgttacaaat
caaggaagagaaaatatgatgaaaaatcaggataaccccatgattaacttcttccccagt
gttataactgatggggggagtacccatcgtactggcattcttcccaaaccatttgctcaa
aatctggtaccaaataacccagattttatggttaatggtgatccagtttttaatagcttt
gataatggaactggtggtgattcaaagcctcgtaaaacacaagagaacttatcagttaca
gataaaaaagagatgaataataacaagcttaatgttcaagggggtaatgaactcagcctt
tccatgcctatattcaaagatccttcaaaccttcaagggaatcagccttcccttttacca
ttttccaagaatggtactgggagtaggcatgttgaatgtgaagacacagtatatccttct
gtaaatgatgccctaaaggctttctctacctaccaacaaaaatttgggcgaacatctttt
ttatcaaataacaagctgccaagccctactccatctgacgaatgtgagggtgaagataca
gatgctcatggggaggtctcaagcactggagagagtaagacacctgaacctgatagggtc
tcaagctctggagagtttaagattgctgagcctgttacggatgttgtccagacatcagga
cgcaacgcgagtaacagtcttctccagaaatcagaacctattacgagtaacaatcttcat
ggtttgaatccttcaatttccttccagtcaatacaagtcaaggaagttatgcccgaaggg
aactcggcttttgggtcaaatcctttaataaagagtcagccaaggagaagtagggatccg
aggcttgcgaacaccaattctgaagcgggcagcagttttgatcttaacaagcatcctgct
tctattgatcctggtaatgtgaaacccatacaacctatacttaatggtggcattttaggt
agtcgaaagaccacgattgttgaggaggctgtgcttgatggtcatagcttgaaacggcaa
agaggcttgtcatatggtgggcaggtgatacctggtagaggtggctggttggaagaaaac
actcctggtgttgtgcctagttcgaaggaacaaagggtggaaatcggtgattctatgaag
gagagaccagtaaaaccagaaaatggcgcggttttgggttcagatatgaaacttgatggt
aatagtaatgcaaatgtctcaactgctgttaggccaggtatggggccaggctcgagcaat
atgggaggtgctatgttacccaatttgggaaacatagcctcattgccagatttgataaag
gatattgttacaaacccaaatatgattttacagttaatccagaaggaacaacaaagatta
ggggcttttcagaagccggttaatccactgccacaaaatctttcctcttcaagctctact
tgtacaatgatgccatcgagtactggggctccattaaaatcttcagacgttcagcagaga
cctgcgttgcaacctcaaatgcctcctcaaacagcatccatgagctttatgaaagaagat
gtggggaaaccccgaatgaaaccccgtgatcctcgacgaattcttcacaccaatttgatt
ccaacaaatgtgagctctacaccacaacctaaacctaatggaactgacccatcaaccatt
cataccggtacaattaccccaagcagccgagaatcgaacatgccagtgaacccaacatct
tcacttcctttgtccactaatttacctgatataactcaaccattcaccaaaaagctaatg
aatattgctgatattttgtctggaaagcaagtggcaaaccccttaggcttactgccccaa
gtcgtctcgcaaccagctcaacttaagactgcaatggaggatggtttggtgccccccaat
attgttatgggcacctctttgccagagaaaactgcagtagattctttggagtcagagaac
ccatggggtgatgtgaaccatcttttagaaggcttggatgataaacagaggcaagcaatc
cagaaggaacgggctagaaggatcgaggagcaaaacaaaatgttttctgccaggaagctc
tgcctcgtgttggatcttgaccacactcttcttaattctgccaagttcatagaagtcgat
caagtccatgatgagatcttaagaaagaaggaggagcaagaccggctcaagcctcgccgt
cacctcttccgctttccacatatggggatgtggaccaagttgcgaccggggatttggaat
tttcttgaaagggctagtaagctttatgagctgcacctttacacaatgggaaacaaggta
tatgccactgagatggcaaaggtgttggatcccactgggtcattattttcagggcgtgtt
atctcaaagggtgacgatggtgacccatttgacggggatgagaggttgcctaaaagcaag
gatttagatggggttttagggatggaatctgcagttgttatcattgatgattctgccaag
gtctggccccatcacaagcacaacttgatcgttgttgagaggtatacatattttccctgt
agcagacgtcagtttggactgcatgggccatctcttctcgagattgaccacgatgaaagg
cctgaggatggcactttggcttcatctttggcggttattgaaaagatacatgagagcttc
ttctctaatcggtccctgaatgaggtagatgtgagagatattctagcatctgaacagcaa
aagatactaaaagggtgcaaagtggtgtttagtagggtctttcatgttggtctcgcaaac
cctcatcttcacccactttggcaaacagctgagcaatttggtgcgatttgcaccaaccag
attgatgatgaggtcactcatgttgtggctatttctcttggcactgataaggttaactgg
gctatatctacgggtagatatgtggtccatcctggatggttggaagcctcagccctgtta
tataggcgagcgaatgagcgggacttttccattatgccccctccaccatcatcatga
DBGET
integrated database retrieval system
