KEGG   Amborella trichopoda: 18435096
Entry
18435096          CDS       T02990                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X2
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
atr  Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:atr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:atr03009]
    18435096
Ribosome biogenesis [BR:atr03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    18435096
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_EML Beta-prop_WDR90_POC16_2nd NBCH_WD40 WD40_Gbeta Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR41 ASA1 Beta-prop_VPS8 Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_SCAP PAC11 Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR75_1st PROPPIN WDR90_beta-prop_4th Beta-prop_SPT8 CFAP251_N Beta-prop_NOL10_N Beta-prop_WDR19_1st DSE1_N Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 DNAI3_WD WDR54 Ge1_WD40
Other DBs
NCBI-GeneID: 18435096
NCBI-ProteinID: XP_006845212
LinkDB
Position
Unknown
AA seq 475 aa
MMMGGVGVMTSREREAVVVCTGENMNAGISILEMETGEELMRIPTCASPPHGLVCLREQY
LVASQIQKHHRSYAGGAIFIWALNKSQVLHRSYPIEPIGPISCTKNGFYLIGGAPSGNIY
LWEVSSGRLLKIWAAHHASLSCLTFSSDDSLLISGSDDGVVFVWSMICLLDMADSQSTGS
STSIHSWSDHDTSITDLVSTSGGSSPMLISSSRDGTCKVRNLVSGSLLLNFTFSSPITAI
ALDPGEQMLYSGCMDGRICISELDIGLEDNPTVFSEDQMTVLRGHKGSIAALSISMSGLY
LVSASNDCTACVWDVASSKVIRNFIYKKGPITNIVVIPLSLLSLKEGYRSLSRLRVSLLD
KGPHPSNAFEGSISLLQTYCTLEDKEVSVARFRSTDSLNEQILDLEQRRTPEAVQMRVET
MVEQRLWAAAMTKQLTTMNKHLQSRLLDLAQGRLLDDSNSTTRKRKFTDPTEHIK
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgatgatgggtggtgttggtgtaatgacaagtagagagagagaagcagttgttgtttgc
acaggtgagaacatgaacgcagggatcagtatcttggagatggaaacaggggaggagttg
atgcgaatacccacatgtgcttcccctccccatggcctggtgtgcctgcgggagcagtac
ttggtcgcttctcagatccagaagcaccatcgctcttatgcaggtggtgcaatctttata
tgggccttaaataagtcacaagtgctccatagaagttatccaatagagcctattgggcca
atctcttgtacaaagaatggattttatcttattggtggagctccttctggtaatatttat
ctttgggaggtctctagtggaaggttgctgaaaatatgggctgcccatcatgcatcattg
agttgtctcaccttctcaagtgatgattcactacttatttctggttctgatgatggagtg
gtttttgtgtggtctatgatctgtttgctagatatggcagattcacaatcaactggaagt
tcaacttctatacattcatggtcggatcatgacacttctataacagatctggtgtcaacc
tctggtggatcgagtccgatgctaatatcgagctcccgtgatggtacatgcaaggttcgg
aaccttgtgtctgggagtctgctgctgaatttcacattttcatccccaataactgccatc
gctcttgatcctggcgagcagatgctgtattcaggatgcatggatggaaggatatgcatc
agtgaacttgatattgggttggaggacaatcctactgttttttcagaggatcagatgaca
gtgctaagaggacacaaaggatcaatcgctgctttgtccatcagtatgagtggattgtat
ttggtctcggcatcaaacgattgtacagcatgtgtttgggatgtggctagttctaaagtc
atacgtaatttcatttataagaaagggccaataacaaatatcgtggtgatcccgctctcc
ttgctctctttgaaagagggatatagaagtctctcccggcttcgagtttctttgttggat
aaggggcctcacccctcgaatgcttttgaaggaagcatcagtctcctgcagacatactgt
acacttgaagacaaagaagtttcggttgctcggtttaggagcacagattcacttaatgaa
cagattcttgatttagagcaaaggcgcacgccagaagcagtccagatgagagtggaaaca
atggtggagcagcggttgtgggcagcagccatgacgaagcagttgacgaccatgaataag
cacctgcagtctaggttactggatcttgcgcaaggtcgcctcttggacgattcgaattcc
actactagaaagagaaagtttactgatccgacagagcacataaaatag

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