Amborella trichopoda: 18435393
Help
Entry
18435393 CDS
T02990
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18435393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18435393
03009 Ribosome biogenesis [BR:
atr03009
]
18435393
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18435393
Spliceosome [BR:
atr03041
]
Complex A
U2 snRNP components
U2 related factors
18435393
Complex B
18435393
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
18435393
Ribosome biogenesis [BR:
atr03009
]
Eukaryotic type
90S particles
Helicases
18435393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
Flavi_DEAD
ABC_tran
SRP54
T2SSE
AAA_30
TsaE
AAA_7
PhoH
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
18435393
NCBI-ProteinID:
XP_006845501
UniProt:
W1PHU8
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MATERKRKVSLFDVVGDPSVAAKKLSVNGSADVNRWNGRPYSQRYFEILEKRKTLPVWQQ
KQEFLDTLEKHQTLILVGETGSGKTTQIPQFVVEAGYTSNRKQIACTQPRRVAAMSVSRR
VAEEMDVTIGEEVGYSIRFEDCTGPKTILKYLTDGMLLREAMTDPLLERYRVIILDEAHE
RTVATDVLFGLLKEVLKNRADLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYT
QDPERDYLEAAIRTVVQIHTCEPHGDILVFLTGEEEIEDACRKITKEINNMGDQVGPVKV
VPLYSTLPPSMQQKIFEPAPPPSKEDGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQ
KVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFSDDLQPQTYPEILR
SNLANVVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSE
FPLDPQMSKMLVVSQEFNCSNEILSISAMLSVPNCFLRPREAQKAADEAKARFGHIDGDH
LTLLNVYHAYKQNNEDPTWCYENFINQRAMKAADNVRQQLVRIMARFNLKLCSTDFNSRD
YYPNIRKAMLTGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSR
NFIRTVTDVRGEWLIDIAPHYYDLSNFPNCEAKRVLERLYQKRERDRGESKGRK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgagaggaagaggaaagttagccttttcgatgtggtgggtgacccctctgtg
gctgccaaaaagctaagcgttaatggctcagctgatgtgaacaggtggaatgggagacct
tattcccaaagatattttgagattcttgagaagaggaagaccttaccggtttggcaacaa
aagcaagagtttcttgatacgctggagaagcaccagacgctcatattagttggagaaact
ggcagtggaaagaccacgcagattcctcagtttgttgttgaggctggttataccagcaac
cgcaagcagattgcttgtacccagcctcgtagagtggctgcaatgtctgtctcacgtcgt
gttgcagaggagatggatgttacaattggggaagaagttggttacagcatccgttttgaa
gactgcactggtccaaaaacaattctcaagtacttgaccgatggtatgcttcttagagaa
gcaatgacagatccactgctggagcgttaccgagtgatcatattggatgaggcccatgag
cgaactgtagcaactgatgttctttttgggcttcttaaggaggtcctaaagaatagagcg
gacctaaagcttgttgttatgagtgcaacattagaggctgaaaaatttcagggttatttt
tatggagccccgcttatgaaagtacctggtaggcttcatcctgttgaaatcttttacaca
caggatccagagagagattatctagaagcagccattagaacggttgtgcaaatacacaca
tgtgaaccccatggggacattttggtctttttaactggagaggaggagatagaagatgct
tgtaggaaaattacaaaggagataaacaacatgggtgatcaagtagggcctgtgaaagtt
gttccactttattctacattgcctccatcaatgcagcagaagatattcgagcctgctcca
cccccatcgaaagaagatggccctcccggtagaaagattgtagtttcaaccaacattgct
gaaacttctttaaccattgatggtatcgtttatgttattgaccctggttttgcaaaacaa
aaggtttataatccgagggttagagttgaatctttgctggtatcgccaatttccaaagca
agtgcacaccagagatctggccgtgcagggagaacccaacctgggaaatgctttagactt
tacactgagaaaagttttagtgatgaccttcaaccacaaacatatcctgagatcttgagg
tcaaatctggcaaatgttgttctcaccctgaaaaagcttggaattgatgacttggttcac
tttgattttatggatccacctgctcctgaaacccttatgcgagcattagaggttttgaac
tacttgggtgctctggatgatgatggaaacctgaccaagttaggagaaattatgagtgaa
tttcctctggatcctcagatgtcgaagatgcttgttgttagtcaagaattcaattgttct
aatgagatcctctcaatttccgctatgctttcagtacccaattgctttctccggcctagg
gaggctcagaaagctgcagatgaagcgaaagctcgatttggacacatcgatggggatcac
cttacgctcttgaatgtctaccacgcttacaagcagaataatgaagaccccacttggtgc
tatgagaacttcattaaccagagggctatgaaagctgctgacaatgtgagacaacagctg
gtgcgcatcatggcgagattcaacctcaaactatgcagtactgacttcaacagccgtgac
tattaccccaacataaggaaagccatgcttacaggctactttatgcaggtagctcacctt
gagcgaacaggccactacttgacagtgaaagataaccaggttgttcacctgcatccttcc
aattgtcttgatcacaagccggaatgggtcatatacaatgagtacgtcttgacaagtaga
aatttcatacgtacggttactgatgtgcggggcgagtggttgattgatattgcgccgcac
tactacgacctttctaacttccccaattgtgaggcaaagcgtgttcttgagagactctac
cagaagcgggaaagggataggggagagagcaaaggcagaaaatga
DBGET
integrated database retrieval system
