Amborella trichopoda: 18435417
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Entry
18435417 CDS
T02990
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18435417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18435417
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
18435417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
18435417
NCBI-ProteinID:
XP_011623805
LinkDB
All DBs
Position
Unknown
AA seq
961 aa
AA seq
DB search
MTYREREGHRGRDSLERDHRERHSSERERRERYSLERDHREGHQERERETKKSKIESHRE
KERDRHHDQKYHESRDSRAREGERHREKEDRRERESKETQRYSESKDDRRERESKEPQRY
SENKDDRRERESKDTLRYSEGKDDRRERESKETSRYSESKGVLDRDGSVERRSHKRKDNG
GEERLEKNDKRRRFEDRVVEESKGSESKHIELEKKEDRKVRKEKRRFEDQVDEESGVSAI
KSEKKDEKMERKERGKKESVKDEVEDETRVVGSLDRGNGQHEHASKVQSDEPILGGDMND
KVQSLATSNGVGSLNNGPTWEAPSSVASRAVHASASSGSPLATKVSLISTPPDDKGLSVT
RSHEAPGKSSTDGTTTAAGKSSLSIDALAKAKKALQIQKELSEKLKKLPQLSKPTVSSPT
GTTQATQAAPSMTKTPTLTTPSPSTMGTSALPVTTIPSVNPASTSMAGISGLTNIPNYEA
VKRAQELAAKLGFHQDPEFAPLINMFPGQAADVSAPQRPAKAPVLRLDALGREIDEHGNV
INMPKPTNLSTLKVNINKQKKEAFQILRPDLDADGENNPYFDETMGINKTKLLRPKRMSF
QFVEEGKWSKQAEIIKFKSQFGEAQAKELRTKQAQLAKAKAELDINPNLIEVSERIPIKE
EKPKDPIPDIEWWDAVLLPSGSYSDVTGDKFNIRMDKITCYVEHPLPIEPPAEPAPPPPQ
PLKLTKKEQKKLRTQRRLAREKERQEMIRQGLIEPPKPKIKMSNLMKVLGSEATQDPTKL
EMEIRSAAAEREQAHVDRNIARKLTPVERREKKERKLFDDPNTFETIVSVYKMNDLSHKQ
TRFKVDINAQENRLTGCAVIFDGFSVVVVEGGSKSIKRYGKLMLRRINWAAAVSNEEEGD
DKEDAPVNKCLLVWQGSVAKPSFNRFFFHECRTEAAARKVFADAGVAHYWDLAANFTEED
I
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgacgtatagagagagagagggacacaggggaagggattctttagagagagaccaccgg
gagaggcattcttcagagagagagcgcagggaaaggtattccttggagagggaccatcgg
gaaggccaccaggagagggagagggagacaaaaaagagtaagatcgagagccatagggag
aaagagagagacagacaccatgatcaaaagtaccatgagagcagagactctagggcacga
gaaggagagagacacagagagaaagaagatcgaagagagagagaatccaaggaaactcaa
aggtactcggagagtaaagatgatcgaagagagagagaatcaaaggaacctcaaaggtac
tcagagaataaagatgatcgaagagagagagaatcaaaggatactctaaggtattctgag
ggtaaggatgatcgaagagagagagaatcaaaggaaacctcgaggtactcagagagtaag
ggtgttcttgatagagatggatcagtagagagaagatcacacaagaggaaagacaatgga
ggtgaagagagattagagaagaatgacaagcggcgaaggtttgaagatcgagttgtagaa
gaatctaagggttcggaatcaaaacacattgaattggagaaaaaggaagataggaaggtt
aggaaagaaaagcgaaggtttgaggaccaagtagatgaagaatccggggtttcagctata
aagtcagagaagaaggatgagaaaatggagaggaaagagagagggaagaaagagagcgtt
aaagatgaagtggaagacgaaactagggtagttgggtctttagatagaggaaatggacaa
cacgagcacgcttcaaaagttcagtctgacgagcccattttgggtggagacatgaacgat
aaagttcagagcttggcgacttcaaacggagttggttctcttaacaatggtcctacatgg
gaagcgccgtcttctgtggcatcaagggccgttcatgcttctgcttcctctggttctcca
cttgctacaaaggtatctttgatttctacccctcctgatgataagggccttagtgttacc
agatctcatgaggctcctggaaaatccagtacagatgggactacaacagcagctggaaaa
agttctctctctattgatgctttagccaaagctaagaaggctttgcaaatccagaaagag
ttgtctgagaaattgaagaagttgccacagttgagtaaacctactgtttcaagtccaact
ggaaccacacaggcaacacaagctgctccttcaatgaccaaaacaccaacattgacaacc
ccaagtccctcgacaatggggacatcagctttaccagtaaccaccataccttctgtgaac
cctgcatccacgtccatggcaggcatttcggggcttacaaacattccaaattatgaagct
gtaaaacgagcacaagaacttgcagctaagttagggtttcaccaagaccctgaatttgcc
cctcttatcaatatgtttcctggacaggctgctgatgtttctgcgcctcagaggcctgca
aaggctcctgtactgcgtcttgatgctcttggaagagaaattgatgaacatggaaatgtt
ataaacatgcctaagccaaccaatctcagcactttgaaggtcaacattaataaacagaag
aaggaagcattccaaatcctccggcccgatttggatgcagatggagaaaataatccctat
tttgatgagactatggggatcaacaaaacaaagcttttaaggcctaagaggatgagcttt
cagtttgttgaggaaggcaaatggtcaaaacaagcagaaataataaaatttaagagtcaa
tttggagaagcacaggccaaggagctaagaactaagcaagcccagctggcaaaggcaaag
gctgaacttgatatcaacccaaatttgatcgaggtttcagagagaattcccattaaggaa
gagaaaccgaaggaccccatccccgacattgagtggtgggatgcagttctgttgccttct
gggagctacagtgatgtcacaggagataaattcaacatcagaatggataaaatcacttgc
tatgttgagcatccccttcctatagagcctcctgctgagcctgccccaccccctccacaa
cccttgaagctgaccaagaaagagcaaaagaagcttcggactcagaggcgccttgctagg
gaaaaagagaggcaagagatgataaggcaaggtctgatagagcccccaaagcccaagatc
aagatgagcaatttaatgaaggttcttggctctgaagcaactcaagatcccacgaagctt
gaaatggagataaggagtgctgctgcagagcgtgaacaggcccatgtagacagaaacatt
gcccgtaagcttacgcctgtggaacgcagagagaagaaagagaggaagcttttcgatgat
ccaaatacattcgagaccatagtctctgtgtacaagatgaacgacctctctcataagcaa
actcgcttcaaagtggatatcaatgctcaagagaataggcttacaggttgtgctgtgatt
ttcgatgggtttagtgtggtggttgtagaaggggggagcaagtctatcaaaaggtatggt
aagctaatgcttagaaggatcaattgggcagctgctgtttcgaatgaagaggagggggat
gataaagaggatgctcctgtcaacaaatgcttgctagtttggcaggggagcgttgccaaa
ccgagttttaatagattttttttccatgagtgccgaactgaagcggctgcccgtaaagtt
tttgctgatgctggggttgcccactattgggatctggctgcaaatttcaccgaagaagat
atataa
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