Amborella trichopoda: 18435639
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Entry
18435639 CDS
T02990
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18435639
09124 Replication and repair
03420 Nucleotide excision repair
18435639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18435639
03400 DNA repair and recombination proteins [BR:
atr03400
]
18435639
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18435639
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18435639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
18435639
NCBI-ProteinID:
XP_020523669
LinkDB
All DBs
Position
Unknown
AA seq
343 aa
AA seq
DB search
MDFRPSRMAVVANSVEAFIREFFDQNPLSHIGLATIKDGLAHRLTELSGSPESHIRALRS
NLGSSGDASLQNALDLVHSYLEQIPSYGHREVIILYSALSTCDPDDVMESIKKCKKAKIR
CSVVGLSAEIYICKHLCEETGGSYTVALDESHFKELLLEHAPAPPAIAEFAVSNLVKMGF
PQRRGEGVVTICSCHKEPKTGGGYTCPRCKACACELPTECQICGLTLISSPHLARSYHHL
FPITPFEGGLATLPYNSLQRLPKTCFGCQQVLPNLGNKSGVRVSCPRCKQHFCVDCDIYI
HESLHNCPGCESLRDFKREGDATSDSNVFSNKRPVLFVGQQRN
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggacttccgaccaagtaggatggcagttgttgcgaactctgtagaagctttcattagg
gaattctttgatcaaaatcctctcagccatattggtttagcgaccatcaaagatggactc
gctcatcgcttaactgaactgagtggtagtcccgagtcacatattagggctctacgtagc
aacttggggtcctctggtgatgcctcattacaaaatgccctagaccttgttcatagctat
ctcgagcaaatcccatcatatggacaccgagaagtcataatcttgtattcggctcttagt
acatgtgatccagatgatgtaatggagtcaattaaaaaatgcaagaaagcaaagatacgg
tgttcggttgttgggctttcggctgagatttacatatgtaaacatctctgtgaggagact
gggggatcctacactgttgcattggatgagtctcattttaaggaattattgctagagcat
gcccctgccccaccagcaatagctgagtttgcggtctctaacttggttaagatgggtttc
ccacaaagaaggggagaaggtgttgttaccatttgttcatgtcacaaggaacctaaaact
ggtggaggctacacctgtccaagatgcaaagcatgcgcatgtgaactacccactgagtgc
caaatatgtgggttgactcttatttcctctccacatttagcgaggtcatatcatcatctg
ttcccaattacgccattcgaaggagggctggccacgcttccttataattcactgcagagg
ttaccaaagacttgttttggctgccagcaggttctacctaatctaggaaacaaatctggt
gttcgtgtctcttgtccgagatgcaagcaacacttctgtgttgactgtgacatatacatt
catgagagcttgcacaattgtccaggctgtgagagcttgagggacttcaagcgagaaggc
gacgccacttcagattcaaacgtttttagtaataagaggccagttctttttgtggggcaa
caacgaaactaa
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