Amborella trichopoda: 18435800
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Entry
18435800 CDS
T02990
Name
(RefSeq) nuclear pore complex protein NUP88 isoform X1
KO
K14318
nuclear pore complex protein Nup88
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18435800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18435800
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18435800
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup88
ATG16
Motif
Other DBs
NCBI-GeneID:
18435800
NCBI-ProteinID:
XP_011623988
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MEEEKWVPLQCHSVFCNSSLCTPHSKSRSRNLLAYDGTSHLYVWDFSKRCVHCLTLRFEN
QEPAGILAASTFKTLQPDVEMGHGLHSMEINRTGESLLIFGDGGLFVLDLFDRTSTKDHV
YICRSALIGSQIYFGDTNFLRVLQVSWHPYSESHIGVLSSDTVFRLFDLSSDLERPEQEY
YLQPLEPARCHSATSLCPVAFSFGGEHLWDRFTVFLVFADGSTYAICPIAPFGSVYNRAS
IEEIYKDAHTLGLKSANSRAVNNSSLAITWLEATFPDLNDQNAGKGTLSTLKAHPYASFD
VSLSLQGPFHKICNEHNDDSANGRVPECEGRAVSFLCRSISKDTVNAISWSSGQIQIDAL
ADEVQPVWNLGSSPRLCVDNGGIIEAVAMICDSSPEKPNNAKLYPSQRTLNTSMADSVWI
GDPPPLLRLAVVDLALPSNILNDSPLTLVADPLIPERFYCLHRGGVDSIMLHFLPFSDQT
IEKNRIGEAPSVHPVLTTYQSETLQPFPLSGFVAIADSFGNTWTVALTSSFECLVMEMTG
LSAYFQVEREKGSPNLTVENDEVLPELVSRELLMGPKDVPIPQLPPSLRSLTPDSIEGRS
TLHEYFKILHEKYVEYAHKVYVELNHHAARLKKITDDQVVRLHEVQQNLLHAEEDEPNIR
DRIGRAFEFNLQLVERLQVLRSLPGIQQKPLTKAEREFKSELETFASHEIDALHSAIEAL
SVRLRRHVPLSPGSVTSSPRQTLPGRRKIPVPDIQISQLKSSVAKLSLINSENTKKVKLV
ETTLRKQETRTDLKR
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagaaatgggtgcccttacaatgccactccgtcttctgcaactcctctctc
tgcacccctcattctaagagtaggtcgagaaatctcttggcctatgatggaacctctcac
ctctatgtgtgggacttttcaaagagatgtgtacactgcctcactcttcgctttgagaat
caggagccagccggcattctagctgcttcgacattcaagacgttgcaacctgatgttgaa
atgggtcatgggctccactccatggaaatcaatagaactggggaatcattactcattttt
ggtgatggtggtttgtttgttttggatctatttgatcgaacttctacaaaagatcatgtt
tacatttgcaggtctgctttgattggctctcaaatctatttcggcgacaccaatttcttg
cgagttttgcaggtttcctggcatccttatagtgaatctcatataggtgtgctttcgtca
gacactgtttttagattatttgatttgtcctctgacctagagagaccagagcaggaatat
tacttgcagccattggaacctgcaagatgccatagtgcaacgtcattatgccctgtagct
ttttcttttggtggcgaacacttgtgggacagatttactgtctttcttgtgttcgctgac
ggttcaacatatgccatttgcccaattgccccttttggcagtgtttataatcgggcttcc
attgaagagatctataaagacgcccatacattgggattaaaatcagccaactctagagct
gttaataattcgagtttggccatcacttggttagaagcaacatttccagatttgaatgat
caaaatgctggaaaaggcactttgtcgacattaaaggcccatccatatgcttcatttgat
gtctctctttcattgcagggcccttttcataaaatttgcaatgagcataatgatgatagt
gccaatggccgggtgcccgagtgcgaaggtcgagctgtgagctttctgtgcaggtcaata
agcaaagacacagtcaatgccatttcctggagcagtgggcagatacaaatcgatgccctg
gcagatgaagtgcaaccagtttggaaccttggaagttcacctcgtctatgtgtagacaat
ggaggaatcattgaagcagtagcaatgatctgtgattcaagcccggagaaacccaacaat
gccaagctttatcccagtcaacgaaccctgaacactagcatggcagactcagtctggatt
ggagacccacctcccctgcttagattggctgtcgtcgacttggcattgccttccaatatt
ttgaatgattctccactcacactggttgctgatcctctcattcctgaaagattctattgt
ttgcataggggtggggttgactcaattatgttgcattttcttccattctctgatcagact
attgaaaagaatagaattggagaagcaccttccgttcatcctgttttgaccacatatcag
agtgagacccttcaaccattcccattgtctggttttgtggcaattgctgattcctttggc
aatacgtggacagttgcacttacatcatccttcgaatgtttggtgatggagatgacagga
ttgagtgcatattttcaggttgagagagaaaagggctctcccaatctcactgttgagaat
gatgaagtgctgcctgagctagttagcagagagttgctcatgggtccaaaagatgtccct
atccctcagctccctccgagtttgcgatcattgaccccggattctattgaagggcgatcc
actcttcatgaatacttcaagattctccatgaaaagtatgtggaatatgcccataaggta
tatgtagaattgaatcaccatgcggctcgcttgaagaagatcacagatgaccaggttgtg
cgtttacatgaagtccaacagaatcttctccatgctgaggaggacgaaccaaacataagg
gatcggattggtcgtgcttttgagtttaacctgcagttagtggagcgccttcaggtgctc
agaagcttgccaggaattcaacaaaaacctcttacaaaagctgaacgggagttcaaatcc
gaacttgaaacgtttgctagtcatgagattgatgctttacactctgctattgaagctttg
agtgtgaggttgagaagacacgttccgctgtctccgggcagtgtgacgagctctcctcga
cagacactaccaggaaggaggaaaattcctgtacctgacattcaaatctcgcagttgaag
tcctctgttgcaaagctttcacttattaatagtgagaatacaaagaaagtcaagcttgtt
gagactacattgaggaagcaagagactagaacggatctaaaaaggtga
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