Amborella trichopoda: 18435950
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Entry
18435950 CDS
T02990
Name
(RefSeq) THO complex subunit 4A isoform X1
KO
K12881
THO complex subunit 4
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18435950
09122 Translation
03013 Nucleocytoplasmic transport
18435950
03015 mRNA surveillance pathway
18435950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18435950
03041 Spliceosome [BR:
atr03041
]
18435950
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18435950
TREX complex
18435950
Spliceosome [BR:
atr03041
]
Complex C
Other components
EJC/TREX
18435950
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
18435950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
18435950
NCBI-ProteinID:
XP_006846043
UniProt:
W1PI99
LinkDB
All DBs
Position
Unknown
AA seq
253 aa
AA seq
DB search
MSSALDMSLDDLIKNNKKSGGGGGGGVMRGRNRGGTSGPVRRIQNRTANRAAPYSMGKAF
QAAPETTWQHDLFADPVGPYGVQAARPSAIETGTKLYISNLDYGVSNEDIKELFSEVGDL
KRYSIHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNLVTPAPIP
QVANGLLATPNGIPRSVQPRGAGIIGRGPRGGGRGGGRGRGRGGRGGGRGEKVSAADLDA
DLEKYHSEAMQIN
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgcgttggatatgtcccttgacgatctgatcaagaacaacaagaaatcaggt
ggtggaggaggtggaggagttatgaggggaagaaacagaggtggaacctctggtccagtt
cgaagaattcagaatcgcactgcaaatagagctgctccgtactctatgggaaaggcattt
caggcagcaccagagactacttggcagcatgatttgtttgcggaccctgtgggtccatat
ggagtgcaggctgctaggccttcagccatagagacggggaccaagctctacatctctaat
cttgactatggagtctcgaacgaggacattaaggaactattttcagaggttggtgatctg
aaaagatattccattcactatgacaggagtggaaggtcaaagggtacggctgaagttgtc
ttttcaaggcgagcagatgctgtagcagctgtgaagcgatacaacaatgtgcagcttgat
gggaagccaatgaaaatagaaatagttggtacaaaccttgttacacctgctccaatacca
caagtggcaaatggattgctggctactccaaatggaattcctagaagtgtgcaaccacgt
ggagctggaatcattggtcggggtccacgaggcgggggtcgaggtgggggcaggggccgt
ggacgagggggaagaggaggcggtcgtggcgaaaaggtctcagccgcagaccttgatgct
gacttggagaaataccattctgaggcgatgcaaattaactga
DBGET
integrated database retrieval system
