Amborella trichopoda: 18436108
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Entry
18436108 CDS
T02990
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18436108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18436108
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18436108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nsp1_C
DUF5798
Prefoldin_2
ACBP4_C
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
18436108
NCBI-ProteinID:
XP_006846196
UniProt:
W1PJM5
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MAGFSFTGFNLSSSSSSSSSSTTTPTFSFAQSSSAPFSSSSSPSTFSLPSSASPFSSSAP
AFSFGTSGSSSSSFTNPSASGFGFGASGSSFSSSLSSGSSASPAFSAFPMGSSSASSSPS
FSFQNPPSSAPSFSFSGSSALKPSSFAFASSSSSSSPSSMASMAPATAVSSAGFDFSISS
SSSPSPSVAPATAGSSPNFGISVPATSSSSTPAFSFGPPSSAPATAKALFGTPSSSSTTT
PSLASLSSSTLSSQFPSIFPASSSSPSPLFSFPSSGASKLSSTSASLTSSTGASSSSSPV
SLGSPLFSSSSSLFSGSGLPSGTQSSPLSTSQNPTSGSTGFSFQKPATPTLGVSTASSSL
STTGTAVPLTASSSLSTTGTVVPLTSGAPSLMSSQTSASTSPALPSFGFSFSSSSSSSVA
TPAIASATDSKIISTKTTTASTITATTTNTSTTAASTSNLSSFSLATKPSSSSSLQTTSV
VPSFSFSVSTAASTETGAKFSFASPNAGTTQAAPSFSQSSSAGIMSSKISTPLQAPKLPS
EITGKTVEEIIKDWNSELQERTAKFRKQAGAISEWDRRILQNRNVLIRLETELANVVERQ
HCLERQLELIETHQQEVDKALQSIEEEAERMYNNERGVLLEDEVASTRDSMYEQAEFIER
EMEQMSEQIKSIIQTLNTNQGSDLDGMDGMTPLDVVVRILNNQLSSLMWIDEKAGEFSLR
IKKLADHGAAVERDLPGFLSW
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcttttcctttacaggcttcaacctctcttcttcttcgtcttcctcttcttca
tctactacgacccctaccttctcgtttgcccagtctagctctgcacccttctcttcttct
tcttctccctctacattttctctcccttcttctgcctctccattttcttcttctgctcct
gcgttttcctttggtacatctggctcttcttcctcttcttttactaatccgtcggcttct
ggttttggatttggtgcatctggttcttctttttcttcttctttgagctcaggatcatct
gcatctcctgctttctctgcatttcccatggggtcttcttctgcttcttcaagccctagt
ttttcatttcagaaccctccatcctctgcaccttcgttttccttctctggatcctcggct
ttgaagccttcttcttttgcatttgcttcgtcttcctcttcatcgtctccttcctccatg
gcctccatggctcctgcaactgctgtttcaagcgctggttttgatttttctatttcttct
tcttcctctccttctccttcggtggctcctgcaacggcaggttcaagccctaattttggc
atttcggttcctgcaacttcatcatcttccactcctgcgttttcatttggacctccctct
tctgcgcctgcaactgctaaggctttatttggaaccccttcttcttcttcgactaccacc
ccatcgcttgcttctttgtcttcttcaactttgagttctcaatttccctccatattccct
gcttcaagttcctctccctcacctttgttttcatttccaagctctggtgcatctaagctc
tcttcaacttctgcttctttgacatcttcaactggtgcatcttcatcaagttcccctgtc
tccctaggttctcctttgttttcttcatcttcttctttgttctctggttcaggtctccca
tcaggaactcagtcatctcctttatcaacttctcagaatcccacttctgggtctactggt
ttttcatttcaaaaacctgcaactccaacacttggagtctctactgcctcttcttctctc
tctactactggtactgcggttcctttaactgcctcttcttctctctctactactggtact
gtggttcctttaacttctggggcaccttcactgatgtcctctcaaacctctgcttctact
tctcctgcattgccttcttttgggttttctttttcttcatcttcatcatcatcagttgca
acacctgctattgcatctgcaactgatagcaaaatcatctctaccaagaccaccacagct
tcaaccatcactgccacgaccaccaacaccagcaccacagcagcttctacaagtaatctt
tcaagcttctcgcttgcaaccaagccttcatcatcttcctcacttcaaacaacctctgtg
gtgccttcatttagtttttctgtctcaactgctgcgtcaactgaaactggtgcaaaattt
agttttgcaagtccaaatgctggtacaacccaggcagccccttcttttagtcaaagcagt
agtgcggggattatgtcttcaaaaataagtacaccactacaagcaccgaaattgccatct
gagattactggaaagactgtagaagagatcatcaaagattggaactccgagttacaggaa
cgcactgcaaagtttagaaagcaagctggggcaatatctgagtgggataggaggatatta
caaaatcgaaacgttctcattaggctagagacagaactggcgaatgtggttgagagacag
cattgtttggagcgccaactggagttgattgaaactcatcaacaagaggttgacaaggca
ttgcaaagtatagaagaagaagctgagaggatgtacaataatgaacgtggtgtactcctt
gaagatgaggtggcatcaacaagagattccatgtatgaacaagctgagtttattgaaagg
gagatggaacagatgtcagaacaaatcaaatcaattattcagaccttaaatacgaatcag
ggttctgatcttgacggtatggatggcatgactccccttgatgttgtcgttcggatttta
aataatcaattgagctccttaatgtggattgatgaaaaggctggtgagttctcgttgcgt
attaagaaactagctgaccatggtgcagctgtggagcgagatttgccaggtttcttatct
tggtga
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