Amborella trichopoda: 18436110
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Entry
18436110 CDS
T02990
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18436110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18436110
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18436110
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18436110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
BAR_4
Motif
Other DBs
NCBI-GeneID:
18436110
NCBI-ProteinID:
XP_006846198
UniProt:
W1PIP6
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETREWLNTAVGDLEGQIDCYEAEVEGLSVKKGKTRPPRLTHLEESITRHKA
HIMKLELILRLLDNDELSPEQVNDVRDFVEDYVERNQEDFDEFSDVDELYNSLPLDKVET
LEDLVPIGPPSLVKGVGSSTAGSGTLSMKSSVTASPTQLSQGSTIRDQAEETASQDSNSD
TLPRTPPSSKSGILSSSNSSAPSGISSGLATGVNTTTSSAGVLARGVGGVTPTSSVLPSP
GPARSILESSASVPLSPITQANSTKEDDSPNVPVRRPSPALSDVGSGRGIGRGIPSQPSA
SVPLSLSSGGGALGAVPAISELAKRSNAGTDERIGSGGVPQLVSPLTNRVLLQQPIPKSN
DSSGSTETSSVVDGATLSGRVFNPSVVSGVQWRPHSSSSLQNQTEAGQVRRPEFAPDQRE
KYLYRLQQVQQQGHGTLLGGPHLPGGNHKQFITQQQSPLLQQLNSQSSSVSGQAGLGIGV
QSQGFSTLTSGLQLQQSIVQQGSAQNAMVSSGILKDSDVSGKLEDQQSQQKPSDDSNVDS
TTSLAFKRNLNNEEELKSSYTLDSPVSGPSSLAESQMPRDTDLSPGQPLPSSQSSVGLGI
IGRRSVSDLGAIGDNLSGSSAALGAVHDQLYNLQMLEAACYNKLPQPSDSERANKYVPKH
PAATPSSYPQTQIPIIENPAFWGRVDSDTLFFAFYNQQNTCQQYLAARELKRQSWRYHKK
YNTWFQRHEEPKITTHDFEQGTYVYFDFHITNDEFPQGWCQRIKTEFTFEYTYLEDELVA
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaaactccagggggagatcgatagggtgttgaaaaaggttcaggaa
ggcgttgatgtctttgatagcatttggaacaaggtatatgacactgagaatgcaaatcag
aaggagaaatttgaagcagatttgaagaaggagattaagaaactccaaaggtacagggac
cagatcaagacatggattcagtctagcgaaatcaaggacaagaaagttagtgcatcttat
gagcaggctctaatggatgcccgcaagctcatagagcgtgaaatggagcgatttaaagtt
tgcgaaaaggaaactaagacaaaggccttctcaaaagaagggctaggccaacaaccgaaa
actgacccgaaagaaaaggccaaagctgagacaagggaatggttaaacactgcggtggga
gatttggagggtcagatcgactgctatgaagctgaagttgagggcctatctgtaaagaaa
ggaaaaacaaggcctcctcggctgacgcatttggaggaatctattacccggcataaggct
catatcatgaagctagagttgattttgagacttttggataatgatgaattaagtcctgaa
caagtaaatgatgttagggatttcgtggaggattacgttgagcgcaatcaggaggacttt
gatgaatttagtgatgttgatgagctgtacaactcattaccgttggacaaagtggaaaca
cttgaagatcttgttcccattggcccccctagcctcgttaagggtgtcggttcttccaca
gcaggcagtgggactttaagcatgaagagttctgttacagcttcacctactcagttatct
caaggaagcaccattagggaccaagctgaagaaacagcttcccaagatagtaattctgat
accttacctaggacgccaccttcttccaaaagtggcatcctgagttcttcaaattcctca
gctccttcaggaatcagttctggtttggcaacgggtgttaatacaactacttccagtgct
ggtgttcttgcccgtggcgtaggtggggtaacccccacttcatcagtgcttccaagtcca
ggacctgcacgcagtatcttggaatctagtgcttcagttccattgtcacctataactcag
gccaattctactaaagaggatgatagtccgaacgttcccgtaagaagaccatctccagct
cttagtgatgttgggtcaggaagaggtattggaagaggtattccaagtcaaccatcagct
agtgttccattgagcttgagttcaggaggtggagcccttggtgcagttcctgcaatctct
gaattggcaaagagaagtaatgcaggaacagatgaaagaattggaagtggtggagttccg
cagctagtttctcctctgaccaatagggttctattgcaacaaccaatccctaagtccaat
gacagctctggttcaaccgaaactagcagcgttgtggatggtgctaccttaagtgggaga
gttttcaatccttcagttgtttcaggagtgcagtggagacctcacagttcgagttcatta
caaaatcagactgaggcgggacaggttagaagacctgaattcgcacctgatcagagggag
aaatatctttaccggctccagcaagtacaacagcaaggtcacggtacccttcttggaggg
cctcatcttcctggaggaaatcataaacagttcattacccaacaacaaagcccccttttg
cagcagttgaattctcaaagctcatctgtatcaggtcaagccggactaggtattggtgtt
caatcccagggcttctctactttgacttctggtttacaactacaacagagtattgtgcaa
cagggttctgctcaaaatgccatggtttcaagtggaatattgaaagattctgatgtctct
gggaagttagaagatcaacaatcccagcagaagccatcagatgattcaaatgtggattct
actacaagcttagcattcaagaggaacctgaataatgaggaggaattaaagagttcatac
acattagatagcccggtttcaggtcctagttcattggctgaaagtcaaatgcccagagat
acagatttatctccagggcaacctttaccatcatcccaatcttcagttggtcttggtatt
attggtcgaagaagcgtttcagatcttggtgccatcggtgataatctcagtggatcaagt
gcagctttgggagcagtgcatgatcagctatataatctacaaatgcttgaagcagcttgt
tacaacaagctccctcaaccaagtgactcagagcgtgcaaacaaatatgtccctaagcat
cctgccgcaaccccttcaagctaccctcaaactcagattcccatcattgagaaccctgcc
ttttgggggagagtggactctgatacattgttctttgcattttataaccaacagaacact
tgtcagcagtacttggctgcaagagagttgaaaaggcagtcatggagataccacaagaag
tacaatacttggtttcagcggcatgaggagccaaaaataacaacacacgattttgaacag
ggaacatatgtctacttcgatttccacataacaaatgatgagttcccacaagggtggtgc
caaagaatcaaaactgagttcacatttgagtacacctaccttgaagatgagcttgtcgca
tag
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