Amborella trichopoda: 18436139
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Entry
18436139 CDS
T02990
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
atr03016
]
18436139
Enzymes [BR:
atr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
18436139
Transfer RNA biogenesis [BR:
atr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
18436139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-GeneID:
18436139
NCBI-ProteinID:
XP_006846225
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MAVRMASSYSILRYASPPFCGFRRARGFMLQKNIELAVRFSVMRTSSSKMFSARDYSSFS
LVEIVMEELEALRRRPKRIRATSKAGLLSSKELIEDKLEKRVLRKGVLLEFRKDSDRILL
GVAEKPDGKRNWMVSDQNGIMSSIKPQQVTYIVPGVEDFNHSEIPEFISKTQDLLDASLL
EYAWEELLEKDKSVTAEGLAEIIYGGVDPLESYCAHVLLSKDELYFSVLESKGSCSVYAP
RPTTQVTELLYRKRAKEAYEKELEEFVQLLKSAKELHFHSKPPKSSWMVDENIKHRILAL
EAHAIDAWKNDDQKKTAGEVLKAMGLQKTSSAAINLLIDIGYFPVHVNLDILKLNIRTLY
SDEIFRAADEILATSCDPDKFNRRDLTFLKVYAIDVDEADELDDALSAERLQDGRIKVWV
HVADPTSLVDYESLVNKEAMRRGTSIFLPTATYPMFPENLAMEGMSLKQGRRCNAVSVSV
ILHPDGSIAEYMVENSVIRPTYMMTYESASELLNLNLEEETELKILSEAAALRLQWRRGQ
GAIDTSAIEARIKVSNPDDPEPSINLYVENQADPAMRLVSEMMILCGEAIATFGSVNNIP
LPYRGQPQSNISPSAFSHLPEGPVRSFAYVKIMRAAEMDFRKPIRHGILGIPGYVQFTSP
IRRYIDLLAHYQVKAFLRGAALPFSAGQLEGIASLISVRVKVAKNLFSSSLRYWLLEYLR
RQPKEKKFNALVLRFIKDRMAALLLVEVGMQASALVSVGVQIGDEIKVQVEEAHPRNDFL
SLKEA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgaatggcgagctcctactctatcttacgctatgcttcccctcctttctgt
ggcttccgtcgcgctcgcgggtttatgttgcagaaaaacattgaattggcggtacggttt
tcagtgatgagaaccagttcgtcgaagatgtttagtgctcgagactattcttcttttagc
ttagttgagattgtcatggaggagcttgaagctctgcgtaggaggccaaagagaataaga
gccactagcaaggcagggttattgagcagcaaggagctgattgaagataaacttgaaaaa
cgtgtcttaagaaaaggagtactgcttgaatttcggaaagattcagacaggattttactt
ggagttgctgaaaaacctgatggaaagagaaattggatggtttctgatcagaatgggatt
atgtcttccataaagcctcagcaagttacgtacattgtgcctggtgtagaagacttcaac
cattcagagatcccagaatttatttcaaaaactcaggatcttttggatgcatcgcttctt
gaatatgcttgggaggagctgttagagaaggacaagtcagtgacagctgaagggttagca
gagataatatacggtggagtggacccactggagagctactgtgctcatgtcttactgtca
aaggatgagttatacttcagtgtgttggaatctaaaggatcctgttctgtttatgcacct
cgccctaccacacaggttactgagctcttatataggaaacgtgcgaaggaggcgtatgag
aaggagctggaggaatttgttcaactattgaagtctgcaaaagaattgcatttccattct
aaacctccgaaatcctcatggatggtggatgagaatatcaaacacagaatcttggctctt
gaagcacatgctatagatgcttggaagaatgacgaccaaaagaaaactgctggagaggta
ctcaaggccatggggttacagaaaacttcatctgcagctataaatctccttatagatatc
ggatactttcctgtacatgtaaatcttgatatattgaagttgaacatccgtacactttat
tcagatgaaatttttagagctgccgatgagatcttagctacttcttgtgatccggacaag
ttcaaccgaagggatctcacattcttgaaggtctatgcaattgatgtggatgaagctgat
gagcttgatgatgcattaagtgcagagagattgcaagatggtagaattaaagtctgggtt
catgttgctgatccaacatccttggtggattatgagagcctcgttaacaaggaagcaatg
agaagaggaacgtccatattcttacccactgccacctatcccatgtttcctgaaaatctt
gccatggaagggatgagcttgaagcaaggaagacgttgtaatgctgtcagtgtatcggtt
atattacatcctgatggaagcattgcagagtacatggtagagaactctgtaatcaggcct
acatatatgatgacatatgaaagtgcctctgagttactgaatttgaacttggaagaagag
acagaactgaaaatcctttctgaggctgcagctcttcgtttacaatggcgccgtggacag
ggtgcaattgatacttcagcaatagaggcacgtattaaggtcagcaacccagatgatccg
gaaccttcaatcaatctgtatgtcgaaaatcaggcagacccagcaatgcgtctggtttct
gagatgatgattttgtgtggagaggctatagccacttttggttcagttaacaatatacct
ttgccctatagaggccagcctcagagcaatatatctccttctgctttctcccatctccct
gaaggacctgttaggagctttgcctatgttaaaataatgcgagccgcagagatggatttc
aggaagcctattcgtcatgggattcttggcattcctggttatgtacagtttacatcgcct
attcgccgatatattgatcttcttgctcactatcaggtcaaagcttttctgagaggagca
gcactgccattctcagcaggacaattagaaggtatagcatcgctaataagcgtgcgagtc
aaagttgctaaaaatctatttagtagtagtttacgttattggttattggaatatctacga
agacagccaaaggaaaagaaattcaatgctttggtcctcagatttatcaaagatcggatg
gcagctttacttcttgtagaggttgggatgcaagcttctgcattagtatcagtgggtgta
cagattggcgatgaaataaaagttcaggttgaagaagctcatccacgtaatgacttcctc
tcccttaaggaggcctga
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