Amborella trichopoda: 18436252
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Entry
18436252 CDS
T02990
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X2
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18436252
03015 mRNA surveillance pathway
18436252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18436252
03041 Spliceosome [BR:
atr03041
]
18436252
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
18436252
Spliceosome [BR:
atr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
18436252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
18436252
NCBI-ProteinID:
XP_006846337
UniProt:
W1PDJ9
LinkDB
All DBs
Position
Unknown
AA seq
885 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKAAKLLKSQKFASELDHLVDISKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDGKDVDGKQIQIQLTGFMEKNTGKFMKELWNLLLSAQKNISGVPQ
QFLDAKEEETKQKKAEADRISHEIKKKKDREEAESEKERWKKLDADNGILETVGATANDI
SKKSSPKALERDLVGRQREKNRASESPPDGHSPSSHRSTPVRRSRSKSLRDSRSRSRSRS
SGERPQSRSMSRSPPPRRRSISIGRRSRSPLYPPRRRRSPRYLRSPPRRRSPRPRRRSLS
PPRRRSPSPRRYRSPSPMRRRSPSPIRRRSPSPPFRRRSPSPPLRRRSPTPIRRRSPFRR
SPSPIRRRSPPSQSPRHRRRSPVRSPRRRPMDSRLTPRSRNRSSSPYRNRRSLSRERLNR
MNGGESRRYRDEYAARRTHMRRSPDQSSPSTEEVDEQTRGMRKVPESYSRPPQTSLRSPQ
RDDRTQSDTSYKIPALSSPPEQSPGQSESPEQRTHLDKGRRKSSPYDSPKRSIRERANSH
VSPDMSNEEDDINYSRELHSHGADPSRKRNIHSLTVSARNEHPRRALAKSESSPVNVADQ
RSSEHQGQSDNFEPRKKEHRSLGSVKSDGRANLPERHTQPSFHASEEIEYGPGRLDSLSL
DNLRNKQSSAKRHVRDTSSPDERDNAERLSMKKSYSRESYGEDENLILQETNVNKISSPF
NAETAKRPMKRLDQNDQCETYNSDEEYEKKRSEKRKQKREESKEASLQNDTGSASPIDER
KEAKRRKKEERKLRKEERRRRREERHRRKEERHASKRKAKSVATVMPPSESERYRGRADE
SDGGVDIRRQTNPSDSEEESEQKRLEIELREKALESLRAKKAISH
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggtttttttcgaggcacatctgctgatcaagatactcggttctctaacaaa
gccgccaagcttttgaagtctcaaaagtttgcatcagagttggatcacctggttgacata
agtaaggtgaaaatggatgtcataagaccctggattgcaaacagggtgactgagcttctc
ggttttgaagatgaagttctcatcaatttcatatatgggctacttgatggaaaggatgta
gatgggaaacaaatacaaatccagcttactgggtttatggagaagaatacagggaaattc
atgaaggagctgtggaatctgcttctcagcgcacagaaaaatattagtggggtgcctcaa
cagtttctggatgccaaggaagaggaaacaaagcaaaagaaggcagaagcagatcgcatc
agtcatgaaattaagaagaagaaggatagagaggaagcagaatctgagaaagaacggtgg
aagaagctggatgctgacaatgggattctggaaactgtgggtgccactgctaatgacatt
tcaaagaaatcttccccaaaggctttagaaagggatttggttggaagacagagagaaaag
aacagggcatctgaatctccacctgatggtcattccccttcttcgcatcgaagcactcca
gtgcgtcgatcaaggagtaagtcattacgtgattccaggagtcgttcaagatctcgcagt
tccggtgaaaggcctcaatcaaggagcatgtcaagatcacctccacctcgtaggcgctcc
atctctataggaaggcgctctcgttctccattatatccccctcgtcgcaggcgttcgcct
cgctaccttagatctccacctaggcggagatcacctcgtcctagaaggaggtcactatct
cccccaaggcgaaggtccccatctccaaggcgctataggtccccttcccctatgaggagg
aggtctccttctcctattagaaggaggtctccttctcctcctttccgtcgaagatcacct
tctcctcctttgcgacgaaggtccccaactcctattagacggaggtccccattccgtagg
tctccatctcccataaggaggaggtcacccccatcacaatcaccaaggcaccgtagacga
tcacctgtgcggtcccctagaaggcggcctatggattctcgtcttacccctcgttcaaga
aataggagttccagtccatatagaaatcgtcgaagcttgagtagggaacgattaaaccgt
atgaatggtggggaatccagaagataccgagatgaatatgccgctcgaagaacacatatg
agaaggtcccctgatcagtcctctcccagtacggaggaggtcgatgaacagactagggga
atgcgcaaggttcctgagtcttattcgcgccctccacaaacttctttaaggtctccacag
cgtgatgataggactcagagtgatactagttataaaatccctgctttatcatcaccacca
gaacaatcacccggccaatcagagtctccagagcaaagaacacatcttgacaaaggcagg
aggaagtccagcccttatgacagccccaagagatccattagagaaagagcaaacagtcat
gtgagtccagatatgagcaatgaggaagatgacatcaactattcgagagagctacacagt
cacggagcagatccttctagaaagagaaatatacattcacttacagtgtcagcgcgaaat
gaacaccctcgaagagccttagcaaagagtgagtcttctcctgtgaatgtagcagatcag
agatcctctgaacatcagggtcagtctgacaactttgagccaagaaagaaagagcaccgc
agcctggggagtgttaaatctgatgggagggctaatttacctgaaaggcacactcaaccc
tcgttccatgcatcagaagaaatagagtatggacctggacgtcttgatagcttgtctttg
gataatctccggaataagcaatcatctgctaagaggcatgttagggatacttcttctccg
gatgaaagagataatgcagagcgtttatccatgaagaagtcatattctagagaaagttat
ggagaggatgagaacctaattctccaggaaactaatgtgaacaagatttcttctccattc
aatgctgaaacagccaagagacccatgaaaagattggatcaaaatgaccagtgcgagaca
tataattccgatgaggaatatgagaaaaaaagatcagagaaaagaaagcagaagagagaa
gagagcaaggaggcatccttgcagaatgatacaggctctgcatctccaatagatgagaga
aaagaggcaaaaagaagaaaaaaggaggaaaggaaattgagaaaggaagaaaggcgacga
aggcgcgaagagaggcaccgtagaaaggaagagaggcacgcgagcaagcggaaagccaaa
tctgttgctactgttatgccgccttcagaatctgagcgatatcggggacgtgcagatgaa
tctgatggtggtgttgatataaggaggcaaacaaatccaagtgacagtgaagaagaatct
gagcagaaaaggctcgaaattgagttgcgagagaaggcccttgaatcacttcgagcaaag
aaggctatcagtcactga
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