Amborella trichopoda: 18436280
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Entry
18436280 CDS
T02990
Name
(RefSeq) transcription initiation factor TFIID subunit 12b
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18436280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18436280
03036 Chromosome and associated proteins [BR:
atr03036
]
18436280
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
18436280
Coactivators
SAGA/TFTC/STAGA complex
18436280
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
18436280
STAGA complex
18436280
TFTC complex
18436280
SAGA complex
18436280
SLIK complex
18436280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIID_20kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
18436280
NCBI-ProteinID:
XP_006846365
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MKILGPTAIGNGVGGIGSAARHLDPIAAQKWIPLWLGYGGSGLGSIGNGVGAIASGARPL
VPWVASTMILVLLPLDALGLTLSNRGLVEARFTKKGYWWAEWAGQYAQALGQFGQGGQQV
LGSLARSGQHIPMLPTQANQLTNIQNQLLAHQPRQKTALVSGSHFLPANSSGQPMPGLQN
IGVMGSLGLNPRANGSLSYNQQRVTHAQMRQAHLAQHQPTSLTSSQKLSAPGLQRVPSLA
SMNHQLSALTQSGQPAMMQNSLSQTQLMNMKSLQSAISSPASPSYHHQLQRQQQNGMHQQ
LHQKQTMPMNQPQMVQQAQQMQQPGSQQLLIQHQQASQQSMQQQPSPRMAGCSIQKPTSL
TGSQPSTPASGTTTGGSSSQGTEASNQVLGKRRIQDLVSQVDPQGKLDPEVEDILLEIAD
DFIDSVTTYACSLAKHRKSSTLESKDLLLHLERNWHLNIPGFSSEEQRNHRKPIANDAHR
KRLEVIRNLMDSQSPDTAVGKDRDSMGQQAVNNLEVLAHQINAVQSEQMFSPAAGPQMVQ
KLTRF
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcttgggacctactgctattggaaatggcgttggtggcattggctctgccgct
agacatcttgatcctatagcagctcaaaagtggatcccattgtggcttggatatgggggt
tcaggacttggctctattgggaatggcgttggcgctattgcgagtggtgccaggcctttg
gtgccctgggtcgcctctactatgattttggtgcttctgcctcttgacgcccttggtctt
accttgagcaataggggtctggtggaggctaggtttacaaagaaggggtattggtgggct
gaatgggctgggcagtacgcgcaggccctcgggcagtttgggcagggaggacagcaggtt
ttggggagcttggcgaggtctgggcagcatattcctatgctgcccacgcaagcaaatcag
ttgactaatattcagaatcagttgttagcacatcagccaaggcagaaaacagctttagtc
tcaggttctcattttcttccagcgaattcttcagggcagccaatgcctgggttacagaat
attggcgtgatgggttctcttggcttaaatccaagagcgaatgggtcgctatcatataac
cagcaacgtgtaactcatgcacaaatgagacaggcgcatttggctcaacatcaaccgacc
tcacttacctcttctcagaagttgtcagctccaggtttacaaagggtgccatcattggca
tccatgaaccatcaactttcagctctgactcaaagtgggcaacctgcaatgatgcaaaac
tctttgtcccaaacacaattgatgaacatgaaatcgctacagtctgccatttcctctcct
gcatctccttcttaccatcatcaactacaaaggcaacagcaaaatgggatgcatcaacaa
ttgcatcagaaacaaaccatgcccatgaatcagccgcaaatggttcaacaagctcaacaa
atgcaacaaccaggatctcagcaacttctcattcaacatcaacaagcatcgcaacaatca
atgcaacagcaaccatctcctagaatggctggatgttcgatccaaaagccgactagttta
acaggatcacaaccaagtactcctgcatcaggcacaactactggtgggagttctagtcaa
ggaacagaagcaagcaaccaagtccttggcaagagaaggatacaggatctggtttctcag
gtagatccacagggaaagctggaccctgaagttgaggatatcctcttggagatagcagat
gacttcattgactcggtcacaacatatgcgtgcagtctagcaaagcataggaaatcttca
acattagaatccaaggatttgttgcttcatttggagaggaactggcatttgaacattcct
ggcttttctagtgaagaacagaggaaccacaggaaaccaatagcgaatgatgcccacagg
aaacgactcgaagtgattcgaaatttgatggactctcaaagccctgacactgctgtggga
aaagatagggattcaatggggcaacaagctgttaacaatttggaagttttggctcaccaa
atcaatgccgtacaaagtgaacaaatgttctctcctgcagctggtcctcaaatggttcaa
aagcttactcgtttctag
DBGET
integrated database retrieval system
