Amborella trichopoda: 18436338
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Entry
18436338 CDS
T02990
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atr03036
]
18436338
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18436338
microRNA pathway
RISC loading complex
18436338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
DND1_DSRM
Helicase_C
PAZ
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
18436338
NCBI-ProteinID:
XP_020524205
LinkDB
All DBs
Position
Unknown
AA seq
2044 aa
AA seq
DB search
MEHKNDSIGVGSGERIGSLEEKMGSDHRASYWLDACEDIDDFMSWGELSVKTGEPLSYEK
IDNGNASRDSFFEASSQEINPICEAPIDSSFFKGIDQFFDNVRSDVCVSAGSETLNGENQ
SLNDGLLIDNMRNLEESCSPLRYLEGVEQHCIEKSEIDVKELMKETHSCGTTPPLSHFNG
DSNCGQNKRSNTTGALVDVERRIDGPKEIEIKGPRERDWKSVDRNNKRSCNGETIDERHY
SVCRREFSRERSSSCRKRGRDSEDMERGGIARIKRERGSSERRDRDCCYRKRCSDSEEMQ
REEMGRGKVERGASERRDRDWRGRDKRGYWERDRSGKMVFRHGTWEADPERDSMRAREKQ
RFSDKVSSPEKKFDEKKEKPAEEQARKYQLDVLEQAKMKNTIAFLETGAGKTLIAVLLIK
SVYKKMLSDNKKILAIFLVPKVPLVYQQAEVIREGTGYNVGHYCGEMGQDFWDARRWQRE
FESKEVLVMTAQILLNILRHSIIRMEAIHLLILDECHHAVKKHPYSLVMSEFYHTTAKEK
RPAVFGMTASPVNLKGVSSQEDCAIKIRNLESKLDSIVCTIKDRKELEKHVPTPLEVVVE
YDKAATLCSLHEQIKQMEFDVEKAALASSKRSKWKFMGARDAGAKEELRLVYGVSERTES
DGAANLVQKLRAINYALAELGQWCAYKVAHSFLTALQSDERVNYQLDVKFQESYLKMVVD
LLHCQLTEGAVPGKDAKGSDEETADVQRGDHDEIEEGELPDSHVASGGEHVDEIIGAAVA
DGKVTPKVQSLIKVLMKYQYTEDFRAIIFVERVVAALVLPKVFAELPSLNFIKCASLIGH
NNNQEMRTRQMQETISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR
GRARKPGSDYILMLERGNLSHETFLKNARNSEETLRREAIERTDLSHLKGNTKFASVVTT
PGSVYQVESTGAIVSLNSAVGLIHFYCSQLPSDRYSILRPEFVMNRHEKPGGSVEYSCKL
QLPCNAPFEKLEGPFCNSMRLAQQAVCLAACQKLHEMGAFTDMLLPDKGSGEEGENVDQN
DEGDPLPGTARHREFYPEGVAQILRGDWILIGKDDCHESELIKLFIYKVKCTNIGNTKDP
FLTQASDFALLFGSELDSEVLLTTIDLFIARTMITRASLVFRGSIEITESQLVSLKCFHV
RLMSIVLDVDVEPSTTPWDAAKGYLFVPIINEEFSDVLKEIDWDLIDMINKTDAWNNPLQ
RARPDVYLGTKERTLGGDRREYGFGKLRYGMAFGQKSHPTYGIRGAVAQFDVVKASGLVP
SRQDLEESNGSPTFRKLSMADTYIDANDLVGRIITAAHSGKRFYVDSVRFDTNAETSFPR
KEGYLGPLEYTSFADYYKQKYGVELIYKKQPLIRGRGVSYCKNLLSPRFESFEGEGETED
TLDKTYYVMLPPELCLVHPLSGSLVRGAQRLPSIMRRIESMLLAIELKDKINYPVPSSMI
LEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQKIVSNIVLY
QYALSKGLQSYIQADRFAPSRWAAPGVPPVFDEDTKDSESTLLGQDSFASKTEQIKSFYD
DDIEEDVDMEDGEIESDSSCYRVLSSKTLADVVEALIGVYYVEGDEKAANHLMNWIGIQV
EFDPKEIGHELKGCQVSESVMRSIDFDSLEGALNIKFKERSLLVEAITHASRPSSGVSCY
QRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKRKLHVHLRHG
SSALESQIRNFVRDVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFMDSGLNTAVV
WKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNLATVQVFVDGIEIGT
AQNPQKKMAQKLAARNALAVLKEKETESQANNGETGKKKNGVQTFTRQTLNDICLRRQWP
MPQYRCINEGGPAHAKRFTYSVRVLTNDKGWTEDCVGEPMPSVKKAKDSAAVLLLELLNR
LYTN
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atggagcacaagaatgattctataggtgtgggctcgggggagcgaattggctcgttggaa
gagaagatgggttctgaccaccgagcttcgtattggcttgatgcctgtgaagacattgat
gattttatgagttggggagagctttccgttaagacaggggaaccgctgtcttatgagaag
atagataatggtaatgcatcacgtgattcttttttcgaagcgtctagccaggaaatcaac
cccatttgtgaagcaccaattgattccagcttcttcaagggaattgatcagttctttgat
aatgtgaggagtgatgtgtgtgttagtgcagggtccgagaccttgaatggggagaatcag
tctttgaatgatggattgttgattgacaatatgagaaatttggaggagagctgtagtcca
ctgcgttatttagagggcgttgagcaacattgcattgagaaatctgaaattgacgttaaa
gagcttatgaaggagacccatagttgtggaacaactcctcccctctcacattttaatggc
gactctaattgtggccaaaacaagaggtcgaacaccactggtgcattggttgatgtggaa
agaagaattgatgggcccaaggaaatagagattaaagggcctagagagagggactggaag
tcggtggataggaataacaagagatcatgtaacggtgaaaccattgatgaaaggcattat
tcggtttgtcgccgtgaattttctagagagagaagttcttcttgcaggaagagagggcgg
gattcggaagatatggagcgggggggaatagctaggatcaaaagggaaaggggaagtagt
gagaggagagacagggattgctgttatcgaaagagatgtagtgattcagaagagatgcaa
agagaggagatgggtagaggcaaagtagagaggggagctagcgagaggagagatagagat
tggaggggtagagataaaagagggtattgggagagggatagatctgggaagatggttttt
cgacatggtacttgggaggctgatcctgagagagactcaatgagagctagagagaagcag
agattctcagataaagttagcagtcctgaaaagaaattcgatgagaagaaagagaaacct
gcagaagagcaggctaggaaataccagttagatgttttggagcaagcaaaaatgaagaac
acaatagcttttctggagactggtgcaggaaagacccttatagctgttcttctaatcaaa
agtgtttacaagaaaatgctcagtgacaataagaagattctggccatatttttggtccca
aaggtccctctcgtgtaccagcaagctgaagttatacgtgaaggaactggttacaatgtt
ggtcattattgtggtgagatgggtcaggacttttgggatgcccgaaggtggcaacgtgag
tttgagtcaaaagaggtacttgtgatgacagcccaaattctattgaatattttacgccat
agcattatccggatggaagcaattcatctacttatattggatgaatgccatcatgctgtg
aagaagcatccatactcacttgtaatgtcagagttctatcacacaacggcgaaggagaaa
agacctgcagtttttggcatgactgcttctcctgtcaacttgaaaggagtttccagccaa
gaagattgcgcgataaaaattcgcaatcttgaaagtaaactcgattcgattgtgtgcacg
ataaaagaccggaaggagctggagaagcatgttccaactcctttagaagttgtggtggag
tacgacaaagcagctaccttgtgctctcttcatgagcaaataaaacagatggaatttgat
gtggagaaagctgcacttgcaagttccaaaaggagcaagtggaagtttatgggggccaga
gatgcaggagccaaagaagaattacggcttgtctatggggtttctgaaagaacagaaagt
gatggagctgccaatcttgttcaaaaattgagggctattaattatgccctcgctgaattg
ggacagtggtgcgcctacaaggttgcacattcctttctgactgccttacagagtgatgaa
agggtgaattatcagcttgatgttaagtttcaggaatcctacttgaaaatggtcgtggac
ctccttcattgtcagttaactgagggagctgtccctggaaaagatgcaaaaggaagcgat
gaagaaactgctgatgtgcagagaggggatcatgatgaaattgaggagggtgaactgcct
gacagtcatgttgcttctggtggagagcatgttgatgagataattggggcagctgtagca
gatggaaaagtgactcctaaagttcagtctttgattaaagttcttatgaagtatcagtat
acagaagatttccgtgccatcatatttgtggaacgggtggttgcagctttagttcttcca
aaggtgtttgctgaactcccatcattaaattttatcaagtgcgcgagcttaattggtcac
aacaacaatcaggagatgcgcacacgccagatgcaagaaaccatttcgaagtttcgtgac
ggtcgagttacattgctcgtagctaccagcgttgcagaagaagggctcgacattcgacag
tgcaatgttgtcattcgttttgatcttgctaaaactgttttggcatacatacaatctcga
ggtcgtgcacgcaaacctggatctgattacattttgatgcttgagaggggaaatctttca
catgagacgttcttgaagaacgcacggaatagtgaggagaccttgcggagagaagctatt
gagagaactgaccttagccatcttaagggcaacacaaaatttgcttcagtggtcaccacg
ccaggatcagtgtatcaagtggagtcaacgggggctattgtcagtctgaattctgctgtt
ggtctcattcatttctattgctcccagcttccaagtgacaggtactctatactccgccca
gaatttgtcatgaatcggcatgagaagccaggtggttctgttgagtactcatgcaagctt
cagcttccttgtaatgctccatttgaaaagcttgagggccctttttgcaattcgatgcgt
cttgctcaacaggctgtttgcttggctgcttgccagaaactccacgagatgggggctttt
actgatatgcttttaccagataagggaagtggagaagagggagagaatgtcgaccagaat
gacgaaggagatcctctacctggaacagcacggcatagggaattttatcctgaaggtgta
gcacaaatattgcgaggagattggattttaattgggaaagatgattgccatgaatcggag
ttaattaaattatttatttataaagtgaagtgtacaaatattggcaacacaaaagaccct
tttctaacacaggcttcagactttgcgctgctctttggcagtgagctggattctgaggtt
ttattaacaacaatagatcttttcattgctcgcacgatgataacaagggcctcccttgtt
tttaggggctccatagagattacagaaagccagctggtgtcattaaagtgctttcatgtg
cggctaatgagcattgtgctggatgttgatgtggaaccttccactacaccatgggatgct
gcaaaaggttatttatttgttcctatcataaatgaagagttttcagatgttctaaaagag
atagattgggatctaatagacatgatcaataaaaccgatgcatggaacaatcctctacag
agggctcgccctgatgtatacttgggtacaaaagagaggacgcttggtggggatagaagg
gagtatggatttggaaagctacgttatggcatggcttttggacaaaagtcgcatcctacc
tatggcatcagaggagctgttgctcagtttgatgttgttaaggcctctggtctggttcct
tctcggcaagatcttgaagaatcaaatgggtctcctacctttcgtaaattatcaatggct
gatacctatattgatgcaaatgaccttgtggggagaataataactgctgcacactctggg
aagcgattttatgtggactccgtacgttttgacacaaatgcagagacctcattccccaga
aaggagggttatttgggaccactggaatacacctcatttgctgattactataaacagaag
tatggagttgaattgatttacaagaaacaacctcttatacgtggacgtggggtctcatat
tgcaagaatctcctttctccaagatttgagtcttttgagggagaaggtgaaaccgaagat
acgcttgacaagacctattatgtgatgctccctcctgagttgtgtcttgtgcatccattg
tcgggatcacttgtacggggggcccagcgattgccttcaattatgaggagaatagagagt
atgcttctcgcaattgaattgaaggataagatcaactaccctgtcccttcttcgatgatc
ttggaagccttgacagctgcttcatgtcaagaaactttctgctatgagagagccgagctg
ttgggagatgcttacctgaagtgggtagtgagcagatacctctttctcaagtatcctcaa
aaacatgaaggccagctcactcgaatgaggcaaaaaatagtcagtaatatcgtactctac
caatatgctctgagcaaagggcttcaatcctatattcaagctgatcgctttgccccatct
agatgggctgcccctggtgtgcccccggtttttgatgaggacaccaaggattcggaatcc
acattattgggccaagatagctttgcatctaagactgagcagattaaaagcttctatgat
gatgacattgaagaggatgttgatatggaagatggtgaaatagagagtgattctagctgt
tatagagttctttctagcaaaactttagccgatgtggtggaagctttgattggggtatat
tatgttgaaggcgatgagaaagctgcaaaccacctaatgaattggattggcatccaggtt
gaatttgatcctaaggaaatagggcacgagttgaaaggttgtcaagtttcggaaagtgtt
atgaggagtatagattttgattctttagagggtgccttgaatatcaagttcaaagagagg
agcctgttagttgaagcaattacgcatgcctcacgtccatcttcaggggtctcttgctac
caaagattggagtttgttggtgatgctgtattggaccacttgataacgagacaccttttc
tttacttataccgacctcccaccaggtcgcttgactgacttacgagctgcagccgtgaac
aatgagaactttgcacgtgttgcagtcaaacgcaagcttcatgtacatcttcgtcatggt
tctagtgccttggaatcacagattaggaactttgtgagagatgttcaagatgagcttagt
aaaccggggttcaattcttttggcctaggagactgcaaagctcccaaagtgcttggcgac
atagttgaatctatagctggtgccatttttatggatagtggacttaatactgctgttgtt
tggaaggtttttcaaccattattgcatccaatggtgacaccggagacgcttccgatgcat
ccggtgcgtgagctccaagagcgctgccaacagcaggcggagggtctcgagtataaggcg
tcacgggctggcaacctcgccactgttcaggtttttgtggatggcatcgagattggaact
gctcagaacccacaaaagaagatggctcagaaattagctgctaggaatgcacttgcagtt
ttgaaagagaaggaaacagagtctcaggccaacaatggagagacaggaaagaagaaaaat
ggagttcaaaccttcacaaggcagacactgaatgatatctgtcttaggagacagtggccc
atgcctcaatacaggtgcataaatgagggtggtccagcgcatgctaagagattcacatac
tcggtgcgtgttctaacaaacgataaaggatggacagaggactgtgttggagaaccaatg
ccaagcgtgaagaaggccaaggactctgcggctgttcttttgttggagctcctcaacaga
ctgtatacaaattga
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integrated database retrieval system
