Amborella trichopoda: 18436783
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Entry
18436783 CDS
T02990
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18436783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18436783
Spliceosome [BR:
atr03041
]
Complex B
Other components
Prp19-related factors
18436783
Complex C
18436783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
zf-CCCH
zf-CCCH_3
zf-CCCH_4
RRM_occluded
zf-CCCH_10
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
18436783
NCBI-ProteinID:
XP_011624354
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MAHRLLRDVEAEGWERSNFPIICESCLGDNPYVRMTKANFDKECKICSRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAITNDAIPKSDVNREYFAEE
HDRKARAGIDYESSYGKAHPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRH
EMPITGELSQQNIKDRYYGVNDPVALKLLNKAGDMPSLAPPEDESIRTLYVGGLDTRVTE
QDLKDHFYAYGEIESIRMVLQRACAFVTYTTREGAERAAEELSNKLVIKGLRLKLMWGKP
QAPKPEDETQDEEAMKQGVVSHGGLLPRAVISQQQSQPQPPGTHDQNPLPPPPPLHYFNI
PQPERTFYPSMDPQRMGALVPSQEASTSSSQSGDGQEKKTQQQQGGQFRPPDGSHYGYQG
QPQQGQYPQFYPPYGFMPHQQFPPPPYQSGQAPPPPPPLPPAPQQYYPQQF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagattgctcagagacgtagaagctgaaggttgggagcgttccaattttcca
atcatatgtgaatcgtgcttaggggacaatccttatgttcgaatgacaaaagcaaatttt
gataaagaatgtaagatttgttcgagacctttcaccgtctttagatggagacctggtcgt
gacgcaaggtataagaaaactgaggtctgtcaaacttgtagcaagctgaagaatgtgtgc
caagtgtgtctccttgatcttgaatatgggttgccagtccaggttcgggacactgcttta
gctattaccaatgatgccattccaaagagtgatgtgaacagggaatactttgcagaagag
catgatcgcaaggctagagctgggatagattatgaatcatcttatggaaaagctcaccca
aatgataccattttaaagctccaaagaacaacaccatattacaagagaaaccgtgcacat
gtctgcagtttctatgtgaggggtgaatgcacaaggggtgctgaatgtccatataggcat
gagatgcccataactggggagttatcacagcagaatatcaaggaccgctactatggtgtg
aatgatccagttgcactgaaacttctcaacaaggcaggcgacatgccttctcttgcccca
cctgaagatgagagcattaggaccctctatgttggtggcctcgacacgcgagtcactgag
caagacctcaaggaccacttctatgcatatggggagattgagtccataagaatggtgctt
caaagggcgtgtgcctttgttacatacacaacccgagaaggtgctgaaagagcagccgag
gagctctcaaacaagctcgtcataaaggggctcaggctaaaactcatgtggggtaaaccc
caagcccctaaaccagaggatgagacccaagatgaagaggccatgaaacaaggggtagtt
tctcatggtgggttacttcctagagctgtcatatctcaacagcaaagccaaccacaacca
ccgggcacccatgatcaaaacccacttccccctccacctcctttgcattactttaacatt
cctcaaccagagagaacattctacccatcaatggaccctcaaagaatgggtgctcttgtt
ccttctcaagaggccagtactagtagctcacaaagtggtgatggtcaagagaagaagaca
caacagcaacaagggggtcagtttaggcctccagatggatctcattatggttatcagggt
caacctcaacaaggtcagtaccctcagttttatcccccatatgggtttatgcctcatcag
caatttccacctcctccttatcagtcgggacaagcaccgccacctccaccaccactacca
ccagcaccgcaacaatattaccctcagcagttttga
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