Amborella trichopoda: 18437216
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Entry
18437216 CDS
T02990
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18437216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18437216
Enzymes [BR:
atr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
18437216
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18437216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARP14_2
Motif
Other DBs
NCBI-GeneID:
18437216
NCBI-ProteinID:
XP_020524710
LinkDB
All DBs
Position
Unknown
AA seq
609 aa
AA seq
DB search
MTHKWQRCFFSSSSKQWRIKQITKSNFSRILPQVKERIHGADFICVSSQKTGTFSAPWRR
ILPIDTPETAYCKSRDAAERFELLHFTVCPITFQGTKVIAYPYNFHLFPRDELNIGMPSY
SFSCQTSYLTSMAQEGFDFNTCIYNGISYLSRVQESASKHQNGNCIPTTIPLTSSKPSFA
DAIFLEGTKSRVKHWRDACKDSSGSSDGALMKSLRKHILGSEVYGTRPCINIDVCTDNQV
PLVAKMLNDVADDLVPLIIPHKNGTAKGIRVVLASSQEDRNLLMEEIQTLEEEQNKHFRG
FREVIDAMSASCKPIVAYNCLTESAFIHSKFLAHLPSTMAEFMCSLRLVFPCILDVNHLM
KSVRPLRKANNLHSALSYIKRQFFAPVEMETPYEVSEDIDVTHGHDVLRIAYVFAKLCSI
LKIFPSTGQLPIGYRSMMDFENAFYPCCVSIQEPLDAEPTIQIDKNKSKQVSTEDLIFLW
GYENGISPDRLRKLLCDVHDAFHGGFQVRIIDDGCAVVGFEKSGSAERFLKDVESGEVES
GALLDLIVGGLRVAGYNAYERVCKLGVWEGKLPNSLERALLGEPVASTAKTGMSEEHKSE
SMMLELSDL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacaagtggcagaggtgcttcttctcctccagctcgaaacaatggcggataaag
cagataactaagtccaacttctctcgtatactccctcaggtgaaggaacgcattcatggt
gccgatttcatctgcgtctcttctcagaagacggggaccttctcagctccatggcgtcgc
atattgcccattgatacccctgaaactgcttactgtaaatcgagggatgcggctgagagg
tttgagttgcttcacttcactgtttgccccatcacttttcagggaaccaaggtgattgcg
tatccgtacaactttcatttgttcccacgtgacgagttaaatataggcatgccatcctac
agtttttcatgccaaacatcctatttgacttcaatggctcaagagggttttgattttaac
acctgcatttacaatggcatatcatacttatcaagagtgcaggaatctgcatcaaaacat
caaaatgggaattgtattccgaccacaatccctttgacttcttcaaaaccatcatttgcg
gatgcaatctttttggagggaactaaatcacgggtgaagcattggagggatgcatgcaaa
gattcaagtgggtcatctgatggggctttaatgaaatcgttaaggaaacatattttggga
agtgaggtatatggaacgagaccatgcataaatatagacgtttgcactgacaatcaggtg
ccgctagttgcaaagatgttgaacgatgtagctgatgaccttgtaccattgataatccca
cacaagaatggtacagcaaaaggaattcgagtagttttggccagttcccaggaggacaga
aaccttctcatggaggagattcagacccttgaggaagaacaaaacaaacacttccgtggc
ttccgagaggtcattgatgcaatgtcggcttcttgtaaaccaatcgttgcgtacaattgt
ctaacagagtctgctttcattcactcaaagttccttgctcacctgccctcaaccatggct
gagttcatgtgctccttacgtttggttttcccttgcattcttgacgtgaaccatttaatg
aagtcagtccgccctttgaggaaagcaaacaatttacattctgctctctcatacataaaa
aggcagttctttgcgcctgtggaaatggaaactccctatgaagtttctgaagatatcgat
gtgacccatggccatgatgtgttgaggattgcctatgtatttgcaaaactatgctctata
cttaagatcttcccctccactggtcaattgcccattggctatcgttctatgatggacttt
gagaatgctttctatccttgttgtgtaagcattcaagagccattagatgcagagccaaca
atacaaatcgataaaaacaagagtaaacaagtgagcactgaagacttgattttcttgtgg
ggttatgagaatgggatatctcctgatagactccggaagcttctatgtgatgtccatgat
gcttttcatgggggctttcaggtgcgaataattgatgatgggtgtgcggttgtggggttt
gaaaagtcaggttcagcagagagattcttgaaagatgtggagtcaggggaggttgagtcg
ggtgcgttattggatttgattgtgggagggcttagggttgcagggtacaatgcctatgag
agggtttgcaagttgggtgtttgggaaggtaagttgccaaactcattggagagggccttg
ttgggtgagcctgttgcatctacagccaagactggtatgtcagaggagcacaagagtgaa
agtatgatgcttgagcttagtgatctctaa
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