Amborella trichopoda: 18437277
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Entry
18437277 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atr
Amborella trichopoda
Pathway
atr00040
Pentose and glucuronate interconversions
atr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18437277
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18437277
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
18437277
NCBI-ProteinID:
XP_006847553
LinkDB
All DBs
Position
Unknown
AA seq
400 aa
AA seq
DB search
MAMAMAGPSLLIILGCLLFSVLPSQSLHLQNVSQHAVSNGYYYGNPTKPQSLLNEIDSCX
RADPNWAILRRALADCSIGFGSGTFGGRNGRIYTVTNPSDDPVNPKPGTLRYGVIQTEPL
WIIFGHDMVITLENELIVNSNKTIDGRGASVDIAYGPCITIQGVSHVIILGFRLHHCKPG
TQGLVRSTPTHVGHRGGSDGDAIAVFASSHVWIDHCSLSHAYDGLIDVIHASTSITISNC
YFSDHDKVMLFGHDDSFKADKXMKVTVVFNRLGANLVQRMPRVRLGYVHVANNMYETWEM
YAIGGSANPTILSEGNYFIAPNNVDLKQVTKRESSGWKSWKWRSYNDVFMNGAYFVQSGW
GSIAPGYGRSQTFTAAHGMLVPSLTTSAGPLLCFPRLPCR
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggccatggcaatggcaggaccttctctgctcattatcctgggatgcctgctgttttcc
gttctcccttcacaatctctccatctgcagaatgtgtcacagcatgctgtctctaatgga
tactactatgggaaccctactaaaccccaatcacttctcaatgagatcgacagttgctag
cgtgctgaccctaattgggctatcctccgtcgagcccttgctgactgcagcataggcttc
ggtagtggcacatttggaggccgcaatggccgtatatatactgtgaccaacccctctgat
gaccctgtcaaccccaagcccggcacgctgcgctacggtgtcatccaaactgaacctttg
tggataatatttggtcatgacatggtcatcacacttgagaatgagctcatcgtgaacagt
aataagaccattgatgggcgtggagcaagcgtcgacattgcatatggtccctgcatcacc
atccaaggtgttagccatgtgatcatccttggctttaggttgcatcactgtaaacctggc
acccaagggctcgtgcgtagcactccaacgcatgtgggtcacagaggtggctccgacggt
gatgcaatagccgtgtttgcttcatcccatgtttggatcgatcactgctctctttctcac
gcatacgatggcctcatcgacgttatccatgcttccacttccatcaccatatcaaattgc
tacttctccgatcatgacaaggtgatgctattcggtcatgatgattctttcaaggccgat
aaatagatgaaagtaacggtcgtattcaatcgcttgggcgctaatttggtgcaaaggatg
cccagggtgagacttggttacgtgcatgttgcaaacaacatgtatgaaacatgggagatg
tacgcaattggagggagtgcaaaccctaccattctaagcgaggggaattacttcattgct
cccaacaatgttgacctcaaacaagtgaccaagagagaaagcagtggttggaagagttgg
aaatggaggtcttataacgatgtattcatgaatggtgcatattttgtgcagtcaggatgg
ggaagcattgcaccaggttatgggcgttcacagacattcacagctgcccatggcatgttg
gtgccgtctctcacgaccagtgcaggtcctcttctttgttttcctcgattaccttgtcgc
tag
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