KEGG   Amborella trichopoda: 18437349
Entry
18437349          CDS       T02990                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
atr  Amborella trichopoda
Pathway
atr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    18437349
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atr03019]
    18437349
   03036 Chromosome and associated proteins [BR:atr03036]
    18437349
Messenger RNA biogenesis [BR:atr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     18437349
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     18437349
    COMPASS/SET1 complex (yeast)
     18437349
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta EIF3I Beta-prop_CAF1B_HIR1 WDR55 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_Aladin WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_VPS8 WD40_MABP1-WDR62_1st PAC11 WDR90_beta-prop_4th WD40_RFWD3 WD_LRWD1 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 18437349
NCBI-ProteinID: XP_011624523
LinkDB
Position
Unknown
AA seq 328 aa
MAVVITELDDDIVRSMSIGAVFTDYVGKISSFDFHRTEDLLVTASEDDSIRLYDIANATV
LKTTYNKKHGVDRVCFTHHPSSIICSSRYNLDATSESLRYLSLYDNRCLRNFKGHKERVV
SLCVSPINDSFMSGSLDHTVRLWDLRVNVCQGLLHLRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNNYVLDAYGGEKRCGF
SLDPCPNSTIEATFTPDGQFVISGSGDGTLHAWSINTRHEVACWNSQVGVTACVKWAPHR
AMFVTASSVLAFWIPDSNSEPADMDSNT
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcggtggtcatcacagagttggatgatgatattgtgagaagcatgtctattggtgca
gtttttacagattatgttggaaagatcagttcttttgattttcatcgaaccgaagatctc
ttagttacagcaagcgaagatgattctatacgcctttatgatattgcaaatgctacggtt
ttaaagacaacgtataacaagaaacatggtgtagatcgtgtatgctttacccaccatccc
agctccataatatgctcttcaagatacaacctggatgctacaagtgaatctctgcgctat
ctttcactatatgacaatcgatgcctccgtaacttcaaggggcacaaagagagagtggtt
tccctctgcgtgtcaccaatcaacgatagcttcatgtccggttcacttgaccacactgta
cgattgtgggacctcagggtgaatgtttgccagggacttctacatttacgtggcaggccc
acagttgcatatgatcaacaaggtcttgtttttgctgtagcaatggaaggaggggccatc
aaattgtttgattcgcgttcctatgataagggtccttttgatacctttctagttggagga
gatacagcggaggtgtgtgatatcaaattcagcaatgatggcaagtccatgctccttacg
acaacaaacaacaataactatgttcttgatgcgtatggcggtgagaagagatgtggattt
agtctagacccatgtcctaattccacaattgaagcaactttcactccagatggacaattt
gtaatatcaggctctggggatggaacccttcatgcatggagcataaacactaggcatgag
gtagcatgttggaactctcaagttggggttacagcatgcgtgaagtgggcccctcaccga
gctatgtttgtgacagcatcttcagttcttgccttttggattcctgactcgaattcagaa
ccagccgatatggactcaaacacttga

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