KEGG   Amborella trichopoda: 18437831
Entry
18437831          CDS       T02990                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
atr  Amborella trichopoda
Pathway
atr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18437831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atr03041]
    18437831
   03036 Chromosome and associated proteins [BR:atr03036]
    18437831
Spliceosome [BR:atr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    18437831
 Complex B
    18437831
 Complex C
   U2 SnRNP specific factors
    18437831
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    18437831
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT HEAT_EZ Htt_N-HEAT_1 Cnd1 HEAT_EF3_N HEAT_ECM29 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N ParcG UME HEAT_Maestro baeRF_family10 DUF2298
Other DBs
NCBI-GeneID: 18437831
NCBI-ProteinID: XP_020524989
LinkDB
Position
Unknown
AA seq 1263 aa
MATSDEEVARIQEERRTKEKELASLTSVTFDADLYGGGNKFEGYGLSIPVNDEEEENLDA
GERAVTRKLASYIAPKSVLNEMPKVGEEDDMGFKKPQRIIDGEDDYRRRRLNRIISPDRN
DAFAMGDKSPDESKSGFAKIMQEEFLKREKDKEREEKLLAKKQEQDEKXEGKHGCFSSWG
CXKRRNRWDQSQEAQESVKKPKVSDWDAPDATPGISRWDATPTPGRAEAATAASGSRRNS
WDETPTPRLADSDATPVGGVTPGATPAGMAWNATPKLSGMGTPTPKRQRSRWDETPATMG
SAAPLPGATPTAFTPVGAVDLATPTPGAINLRGAITPEQYNLLRWEKDIGEWNRPLSDEE
LDATFPQEGYKILEPPASYVPIRTPARKLLTTPTPMGTPLYSIPEENRGEQFDVPKEAPG
GLPFMKPEDYQYFGALLNEEDQEELSTEEQKERKIMKLLMKVKNGXPPQRKTALRQLTDK
AREFRAGPLFNRILPLLMSPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIVPLL
IDEDYYARVEGREIISNLSKAAGLATMISAMRPDIDNMDEYVRNTTARAFSVVASALGIP
ALLPFLKAVCQSKKSWQARHTGTKIVQQIAILMGCAVLPHLRYLVQIIEHGLNDENQKVR
TITALSLASLAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDPMYA
SYYTKEVMVILIREFQSPDEEMKKNVLKVAKQCVSTEGVEVDFIRTEVLPEXFRNFWVRR
MAMDRRNYRQLVDTTVEIANDDGVADIIGRVVGDLKDESEPYRRMVRETIEKVVANLGAP
DINPRLEENLIDGILYAFREQTSDDANVLLNGFGAVINALGQRVKPFLPQICFIIKWRLN
NKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEDLGEEYPEVLGSILGALKAIV
NVIGMTKMTPANKDLLPRLTPILKNRHEKVQANCIDLVGRIADRGTEFMPARELMRICFE
LLEMLKAHKKGIQRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAE
TCSPFTVLPALVDEYRVPDLNMQNGVLKSLSFLFEYIGEXGKDYIYAVTPLLEDALMDTD
LVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSSHVINAVTEAIEGMRVAL
GPAAVLHYSLQGSFHPARIVREVYWKIYNSLYIVSQDGLVAAYPVLEDEGNDIFSRPELM
MFI
NT seq 3792 nt   +upstreamnt  +downstreamnt
atggcgacctcagatgaagaggttgccaggattcaggaagagaggaggacgaaggagaag
gagctcgcttccctaactagtgtgacatttgatgccgatctctatggtgggggcaacaaa
tttgaaggctatggactctcgatccctgtcaatgacgaggaggaagaaaatctagacgca
ggtgagcgtgcagttactcgcaaacttgcttcatacattgccccaaaatctgtcttaaat
gagatgcccaaagtgggcgaagaagatgacatgggtttcaaaaaaccccaaagaatcatt
gacggagaagatgattatagaaggagaaggctcaatcgaataatctcgcctgatcggaac
gatgcctttgcgatgggagacaagagccctgatgaatcaaagagtggctttgccaaaatc
atgcaagaggaatttttgaagagagagaaagacaaggaaagagaggagaaactgcttgcg
aagaagcaagagcaagatgagaaangagaaggcaagcacgggtgtttctcaagctggggg
tgctaaaaacgaagaaatcgatgggaccaatctcaagaggctcaagaaagtgtgaaaaaa
ccaaaagtttcagattgggatgcacccgatgctacaccagggataagccgatgggatgct
actccaactcctggtcgagctgaagctgcaactgcagctagtgggtcaaggcgaaatagc
tgggatgagacaccaacaccaaggttggctgattccgatgctacaccagttggtggtgtc
acgcctggtgccacaccagcaggtatggcttggaatgccactccaaagctttcgggtatg
ggtaccccaacacccaaaagacaaagatctcgatgggatgagacccctgcaacaatgggt
tctgctgctcctcttcccggtgctaccccaactgcctttacgccagttggggctgttgat
cttgctactccaacacctggtgccattaatctaagaggagcgataacacctgaacagtat
aatttgttgaggtgggagaaggatataggtgagtggaataggcctctgagtgatgaggag
ttggatgcgacgtttcctcaagagggttataagattttggagccaccggcttcatatgta
cctataagaacaccagcaaggaagctccttaccaccccaacccctatgggtacgcctttg
tattcgattcctgaagagaataggggcgagcagtttgatgtgcccaaagaggctcctggt
gggctgccatttatgaagcctgaggattatcaatactttggggctttgttgaatgaggaa
gatcaagaggaattgtcaacagaagagcaaaaggagaggaagatcatgaaactcctgatg
aaggtgaagaatggtnaccccccacaaaggaaaacagcacttaggcagctcactgataag
gctcgagaatttcgggcaggtccactttttaacagaattttgcccttgctaatgtcgcct
actctcgaggaccaggagaggcatcttttggttaaagtcatcgatagggtgctttacaag
cttgatgaactagtcaggccttttgtgcacaagatactggtcgttattgtgccactccta
attgatgaggattactatgctagagttgagggaagagagattatttcgaatcttagcaag
gctgctggtttggctaccatgatttcagctatgaggcctgatattgataacatggatgag
tatgtaaggaatacaacggcaagggccttcagtgttgtggcttctgcccttggtattcct
gcactattgccctttttgaaggcagtctgtcagagtaagaaatcatggcaagctaggcac
actggtactaagattgtgcagcagattgctattctcatgggttgtgcagttcttccccat
ctgaggtatttagtgcagatcatagagcatgggttgaatgatgagaaccaaaaggtgaga
accattactgctttgtcacttgcttcccttgctgaagctgctgctccttatggtattgag
agtttcgattcagttttgaagcctttgtggaaaggtataaggtctcataggggcaaggtc
cttgctgctttcttgaaggccattggttttatcatccccctcatggatccaatgtatgcc
agctactacacaaaggaagttatggtcatattgattcgagagttccagtctccggatgag
gagatgaagaagaatgttttgaaggttgctaagcagtgtgtgagcactgagggggtggag
gttgattttatcaggaccgaggttttgccagaantgttcagaaacttttgggtcaggagg
atggctatggatcgtcgcaattataggcagttggtcgataccactgttgaaattgcaaat
gacgatggtgtggctgatattatcggaagggttgttggggacctcaaagatgagagtgag
ccatacaggcgtatggttagggagacgatcgagaaagtggttgctaacttgggggctccc
gatataaatcctcgcttggaggagaacttaatcgatggaatcttatatgctttccgagag
caaacaagcgatgatgccaatgttctgctcaatgggtttggagcagtgatcaatgcccta
gggcagagagtgaagcccttcctgccccaaatatgttttatcattaaatggcgtttgaat
aataagagtgcaaaagtgaggcagcaagctgctgaccttatttctagaattgcagtggtt
atgaagcaatgccaagaggaacaattaatgggtcacctgggtgtggtgctttatgaggat
cttggagaagaataccctgaagtcttgggttcgatacttggggcattgaaggctattgtg
aatgttattggaatgacaaaaatgactcctgccaacaaagatttgctcccccgattgacc
cccatattgaagaatcgacatgagaaggtgcaagcgaactgcattgaccttgtcggaagg
attgccgatcgcgggacagagtttatgcctgcaagagagttgatgaggatttgttttgag
cttcttgaaatgctcaaggcccacaaaaagggaatccaaagggccactgttaacaccttt
gggtatattgctaaggccatagggccacaagatgtcttggccacccttttgaacaacctc
aaggttcaggagaggcaaaatcgtgtgtgcaccactgtggcgattgccattgttgctgag
acctgttccccgttcacagtcttgcccgctctggtggatgagtatagggttcccgacctt
aatatgcaaaatggggttctcaaatctctctctttcttgtttgagtatattggggagnag
ggtaaggattatatatatgcagtgactccattgcttgaggatgctctaatggacacggac
ctggttcatcggcagactgctgcctctgctgtgaagcacatggctttgggtgttgcaggg
ttgggttgtgaggatgctttggttcacctgctgaattatgtgtggccaaatatattcgag
acctcgtcccatgtaattaatgcagtcacggaagcaattgaagggatgagagtggctctg
ggtcctgctgctgttctacactactctcttcaagggtcgtttcatccagctagaatagtt
agagaggtttattggaagatctataattctttgtacattgtttcgcaagatgggcttgtg
gcggcttatcctgtgttggaggacgaggggaatgatatattcagcaggccagagctgatg
atgttcatttag

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