Amborella trichopoda: 18437968
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Entry
18437968 CDS
T02990
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
atr03015
mRNA surveillance pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18437968
09122 Translation
03013 Nucleocytoplasmic transport
18437968
03015 mRNA surveillance pathway
18437968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18437968
03041 Spliceosome [BR:
atr03041
]
18437968
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
18437968
Spliceosome [BR:
atr03041
]
Common components
Common spliceosomal components
Cap binding complex
18437968
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
MscS_porin
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
18437968
NCBI-ProteinID:
XP_006848227
UniProt:
W1PP24
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MSSWRSFLLRIGDKCPEYGGNSDIEDHIEKCYGILWRELDHSPDDISLFLLQCAEQLPHK
SSIYGTLVGLINLDNDDFVKRVVSDTQTNLQNALDLGSCDKIRILLRFLTVLMCSNVVQP
SAVIEVFEALLSSAATTVDEEKGNPSWQARADFYVTCILSCLPWGGAELFERASEEIERV
MVGIEAYLSIRKRVSDTGFLVFDNDDKTDENIAEKDFLEDLWERIQALSSNGWKVDSAPR
PHLSFEARLVSGKCHDFGPISCPEQPAALSSLSMNRSDKQKHEAELKYPQRLRRLNIFPA
SKIEENMQPIDRFIVEEYLLDVLMYLNGCRKECAAYMVGLPVPFRYEYLMAETIFSQLLL
LPQPAFKPIYYTLVIIDLCKALPGAFPAVVAGAVRAIFERVGDLDMECRTRLVLWFSHHL
SNFQFIWQWEEWAHCLDLPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENASTLEELLPP
NGGPSFKYSAGDSEEHSLSENLCTMVRGRKTAREVISWLEEAIVPTHGPKVALEVVVQTL
LDIGSKSFTHLVNVLERYGQVISKLCPDQEKQVWLIDEVSLYWKNSAQMTALTIDRMMGY
RLVSNLSIISWVFSPANVKQFHTSDRPWEILRNAVGKTYNRIRDLRKEISSLEKSIVSAE
ASAAEAQAESDAAESRLEVVDGEPIQAEPPSRLKRLKAFAEKAKEEAVSLQESLEAKQAL
LSRAITENEAMFISLYKSLANVLMECLPRVYCDKHNDHIQLDLDDEESSKMDVDDDENKK
SNRGGEINGHDTQEEEHWCHCTLGYVKALSRQYASEIWLHIEKLDAEVFTKDMHPSFLNA
VYAGLRRPYR
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggcgaagttttctcctcagaattggagataaatgtcctgaatacggtgga
aactctgatattgaagatcacattgaaaaatgttatggcattttgtggcgtgaactggac
cactctccagatgatatctcattgtttttattacaatgtgctgagcagctgccacacaag
agttctatatatggaacactggttggtttgataaatttggacaatgatgattttgttaag
agagtggtcagcgatacccaaactaatttacagaatgctttggatttgggaagttgcgac
aagattcgcatactattgcgattcctcacagtactgatgtgtagcaatgttgttcaacca
agtgctgttattgaagtctttgaggctttgctttcctcagccgctacaacggtagatgag
gagaaagggaatccatcatggcaagcacgagctgatttttatgtgacttgcattttatct
tgcctgccttggggaggggctgagctatttgagcgtgcttcagaggaaattgagagagtt
atggttggtattgaggcttacttgagcatcagaaagcgtgtctctgatactggcttctta
gtatttgataatgatgataaaactgatgaaaatattgctgagaaggattttttggaggac
ttatgggagcgaattcaagccctctcaagcaatggatggaaagttgatagtgctcctaga
ccccacctttcctttgaagcacgattagtatctggcaaatgtcatgactttgggccgata
agctgccctgaacaacctgccgctttgtcatccctatctatgaacagaagtgataaacaa
aagcatgaagctgagttgaagtatcctcaaaggcttcgtagacttaatatatttcctgca
agtaaaattgaggagaatatgcagccaatcgatcgcttcattgttgaggagtatttgctc
gatgtgcttatgtacctgaatggctgccgcaaagaatgtgctgcctatatggtgggcttg
cctgtaccatttcgctacgagtatttgatggcagagacaatattttcacagcttcttttg
cttcctcaaccagccttcaagccaatttactacacactggtcataattgatctttgcaag
gcccttccgggagcttttcctgcagttgtggcaggagcagttcgtgctatctttgaaagg
gttggtgacttggatatggaatgccgcacgcggcttgtcctctggttttcgcatcacttg
tcaaattttcaatttatttggcaatgggaagagtgggctcattgcttagaccttcctaaa
tgggccccacaacgtgttttcgttcaggaagtgttggaaagagaagtccgtttatcatac
tgggataaaataaagcagagcatagagaatgcctcaacattagaggaattgcttccaccc
aacggtgggccctcctttaaatatagtgctggggatagtgaggagcactccctctcagaa
aacctttgcaccatggtcagaggaaggaaaactgctcgtgaagttatatcgtggttagaa
gaagctattgtaccaacccatggcccaaaagttgcacttgaggtggttgttcagactctc
ctagatattggatcaaaaagcttcactcatcttgttaatgtgttagagagatacggtcaa
gtcatctctaagctatgtccagatcaggaaaagcaggtgtggcttatagacgaagtgagt
ttgtattggaagaacagtgctcagatgactgccttaaccatcgaccgcatgatgggttac
cgcttggtctcaaatctatccatcatcagttgggttttctctcctgctaatgttaaacaa
tttcatacatctgatcgtccatgggagattctgagaaatgctgtgggcaaaacatacaac
cgcattcgtgatctgagaaaagagatatcttctctcgagaaaagcattgtttctgctgaa
gcttctgcagctgaggcccaagctgaatcagatgctgccgaatcaaggcttgaagtagtg
gatggagaacctattcaagctgaacccccttcgagattgaagcgcttgaaagcatttgca
gagaaagcaaaagaagaggcagtttctctgcaggaatctttggaggctaagcaggccctc
ctttcacgggccatcactgaaaatgaggcaatgttcatatctttgtacaaaagcttggca
aatgtgctgatggaatgccttcctcgcgtctattgtgacaagcataatgatcacatccag
ttagatcttgatgatgaagaatcatccaaaatggacgtggatgatgatgagaacaaaaaa
tctaaccggggaggtgaaattaatggccatgacacacaagaagaagagcattggtgccac
tgtacgctgggatatgtcaaggctctgtctaggcagtacgcttctgagatctggctgcat
atagagaagctggacgctgaagtgtttacaaaagatatgcatccatcctttctaaatgca
gtgtatgctgggttacgacgtccttatcggtga
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