Amborella trichopoda: 18438476
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Entry
18438476 CDS
T02990
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Pathway
atr04120
Ubiquitin mediated proteolysis
atr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18438476
04120 Ubiquitin mediated proteolysis
18438476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18438476
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18438476
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
U-box type E3
18438476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
18438476
NCBI-ProteinID:
XP_011625050
LinkDB
All DBs
Position
Unknown
AA seq
1002 aa
AA seq
DB search
MANQKPRKSLADIEDGLLQRIFRVTLSDELGSDYVYLEMTAAEILSEGKPLSLSRDVMER
VLIDRLSRVLPDTQPPFEYLMGCYQRAYDEGKRVASMRDKELRSELESVIKQAKDLAVSY
SRIHLGNPDMFPHPQTPDRSPLLMVILTMFSSSVDLIGDGTPIGPPGFVDDFFRDVDEET
LEPVLRPLYEDLRGSANKVSVLGSFQQPLGALLKLVSYPNSAKALVNHPAWIPRGDYVDG
RVMEVASILGPFFHVSALPDHDVFMSEPDVGLQCFSNASTRRPADLMSSFTTIKTLTNYL
YDGLNNVFLTLLRLKDTRERALSYLSELIKKNSGRSHIQVNQFSCASSGMFVNLSAVMLR
LCEPFLDANLTKRDKIDPQYVFDNKRIDLSGLTALHASSEEVASWVANKYSEPTEGSTEN
RFLESQEATSSGNNVLSNTKPLLNSRGTSKNYKFICECFFLTARVLNLGLLKAFSDYKNI
AQDLTRCEDTLASLRAMRERASSSQLEQDLNRFEVEIERILREKLCYEAQILRDEQLLQQ
ALSFYRLMVVWLVDLVGGFRMPLPSKCPMVFACMPEHFVEDAMELLLYASRLTKALDGFL
LDDFMNFIIMFMASPAYVKNPYLRAKMVEVLNCWMPDKSGSSATASLFEGHQLALEYLVY
NLLKLYVDIEFTGAHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRKIAKEEEKGVYLNF
LNFLINDSIYLLDESLNKILELKELESEMANTEEWEKRPAPERQERMRLFHSQENIIRID
MKLANEDVGMLAFTSEQITAPFLLPEMVERVANMLNYFLLQLVGPQRRSLHLKDPEKYEF
RPKKLLKQIVDIYVHIARGDKQNVFPTAISKDGRSYNEQIFAAAVVVLCKIGEDGRVIQE
FIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMRDPVILPSSRITVDRPIIQRHL
LSDNTDPFNRSHLTQDMLIPDLELKARIEEFISSRNLRKHAQ
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccagaaaccccgaaaaagccttgcagatatagaggatggcttactccaacgc
atctttcgcgttaccttgagcgacgagttgggctcggactatgtgtatttagagatgaca
gctgcggagatactcagcgaagggaaaccactttctctctctagagatgtaatggagaga
gttctcatcgatcgtctatctagagtccttccagacacccaacctccatttgagtaccta
atgggttgctatcaaagggcttatgacgagggcaagagagtagcctccatgagagacaag
gaattgaggtctgagcttgaatctgtgatcaaacaagcaaaggatttagctgtttcttac
tctagaattcacttgggtaatccagatatgttccctcaccctcaaacacctgacagatca
cctcttcttatggtaattttaactatgttttctagtagtgttgatttaattggtgatggt
acgccaattgggccacctggttttgttgatgatttcttcagagacgtggatgaagagaca
ctggagccggtattgaggcctttgtatgaggatttgagaggctcagcgaataaggtttca
gttcttggtagttttcaacaaccattaggtgcgcttttgaagctggtttcttacccgaat
agtgcaaaggctttggttaaccaccctgcatggattcctagaggggactatgtagatggt
cgggtcatggaagtggcgagcatccttggacccttctttcatgttagcgcgcttcctgat
catgatgttttcatgagcgaaccagatgttgggttacagtgtttctcaaatgcatcaaca
cgtcgaccagcagatctaatgtcgtctttcactactattaaaactttgacgaactatctc
tatgatggccttaacaatgtttttctcacactattgaggctgaaagatactcgagagcgt
gctctgagctatctttcagagttgatcaagaaaaactcggggagatctcatattcaggta
aaccaattttcctgtgcgagttcgggtatgtttgtcaatctcagtgctgtcatgcttcgg
ctgtgcgagccctttctagatgcaaatttgacaaagagggacaaaattgatccacaatat
gtttttgataacaaaaggattgacttaagtggtttgacagctcttcatgcatcatctgaa
gaagttgcttcttgggttgccaataaatattctgagcccacggaagggtctacagagaac
cggttcttggaatctcaagaagccacaagctctgggaataatgttctctctaatacaaag
ccattgctgaattctcgtgggacatcaaaaaattataaatttatctgcgagtgtttcttc
ctgacagcaagggtgctcaacttgggtttgttgaaagctttctctgattacaagaatata
gctcaggacttgacaagatgtgaagatactcttgcttctcttagagcaatgcgggaacgg
gcatcctcttcccagttggagcaggatttaaatcgttttgaggttgaaattgagagaatc
ctacgggagaagctatgctatgaagctcaaatattgagggatgaacaacttcttcagcag
gccctatcgttctataggctaatggttgtctggttggttgatcttgttggtggcttcaga
atgccactcccttccaagtgcccaatggtctttgcatgtatgccagagcactttgttgaa
gatgccatggaattacttctctatgcttctcgtcttacaaaagctttggatggtttctta
ctggatgatttcatgaattttattattatgttcatggcaagtccagcctatgtaaaaaac
ccttatctaagggcaaaaatggtggaggtcttgaattgctggatgccggataaaagtggt
tcttctgctacagcttcactttttgaaggccatcagctagctctagaatatttagtttac
aatcttctgaagctttatgtggacattgagttcaccggtgctcacacacagttctatgat
aagttcaacattcggcataatattgccgaacttctcgagtatctttggcaggttcctagc
caccgtaatgcatggaggaagattgctaaagaagaagagaagggagtttacttgaacttc
ttgaattttctcattaatgatagcatatatcttcttgatgaaagtctcaataaaattctg
gaactaaaagagttggaatcagaaatggctaatactgaggagtgggaaaagagaccagca
ccagaaaggcaggagagaatgcgcctgtttcattcccaagagaatattatccgaattgac
atgaaattggcaaacgaagatgtcgggatgcttgcttttacatcggaacagattactgct
ccctttcttcttcctgaaatggtagaaagggtggcaaatatgctaaactatttcttgcta
caacttgttgggccccaaagaagatctctgcatctcaaagaccctgaaaaatatgagttt
cggcccaagaaactgctaaagcaaattgtagatatttatgttcatattgcacgtggagac
aagcaaaatgttttcccaactgccatctccaaggatggtcgatcatacaatgaacagata
tttgctgctgctgtggttgttctttgcaaaataggagaagatgggagggtaattcaggaa
tttattgagctcggtgcaaaagcgaaagctgcagcttctgaggcaatggatgcagaggct
gcacttggagacatacctgatgaatttctcgatccaattcagtacacattaatgagagat
cctgtaattctaccttcatcgaggataacagtggacagaccaataatacagagacacttg
ctcagcgataatactgatccattcaatcgatcacatctcactcaagacatgcttattcct
gatttagaacttaaggcaagaattgaagaattcatctcatcccgaaatttgaggaaacat
gcccaatga
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integrated database retrieval system
