Amborella trichopoda: 18438855
Help
Entry
18438855 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18438855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18438855
03012 Translation factors [BR:
atr03012
]
18438855
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18438855
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18438855
Translation factors [BR:
atr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18438855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
T2SSE
nSTAND3
Rad17
NPHP3_N
ATPase
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
18438855
NCBI-ProteinID:
XP_011625140
LinkDB
All DBs
Position
Unknown
AA seq
999 aa
AA seq
DB search
MSSNTNFRGGGGRRVVGGRGGRRGGGGGGGGGRGEQRWWDPIWRAERLRQKAAEVEKVDE
NEWWTKMEDMERSGQQELIVKRNYGREGQNILEDMAHQLGLYFHAYNKGRTLVVSKIPLP
NYRADLDEWHGSTQQEIHMSTEIQRRVGSILANSKEDVPAAESIGASSQARPQLLPIGEM
RNSKSPLALDALKERINIELRDEQHKGRDTPSSKEMLGLRETLPAYKLKHEFLKAVKNNQ
VLVVSGETGCGKTTQLPQFIIEEEIESLRGTECNIICTQPRRISAISVASRISSERGENL
GETVGYQIRLEAKRSEKTRLLFCTTGVLLRRLVHEPELIGVSHILVDEIHERGINEDFLI
IILRDLLPHRPDLRLILMSATINAEMFSKYFGNAPIIHIPGFTFPVAEVFLEDLLEKSCY
NIKSDSINFSGNSRRRRQMDQKKDTLTELFEEVDIDSHFKAYRSSTRRSLDAWSPSQLDL
SLVEATIEYVCQYERDGAILVFLTGWDEISKLLDKIKSNSFLGNSNKFLLLPLHGSMPTI
NQREIFERPPSNMRKIVIATNIAESSITINDVVFVIDCGKAKETSYDALNKLACLLPSWI
SKASALQRRGRAGRVQPGVCYRLYPRIIYDAMPQYQLPEILRTLLQELCLNIKSLQLGNI
ASFLAKALQPPDPLSVQNAIDLLKIIGALDDTEELTPLGHHLCSLPVDPNIGKMLLLASI
FQCLDPALTIAAALAHRDPFVLPLNRKEEADEAKRSFAGDSYSDHIALLRAFEAWQHAKR
NGRERQFCWENFLSPITLQMMEDMRNQFCRLLSDIGFLNKGRGLKEYNVYSEDVEMVCAI
LCAGLYPNVLQCKRRGKRTAFYSKEVGQVDMHPSSVNAVVHQFPLPYMVYSEKVKTSSIY
IRDSTNISDYALLLFGXNLLASQTGEGIEMLGGYLHFSASKSVLQLIQKLRWELDKLLQR
KIEDPELDIPSEGKGVVAAAIELLNNPNVKQHTNRRGRS
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgaacactaatttcaggggaggaggaggcagaagggttgtcggaggaagagga
ggaagaaggggaggaggtggaggtgggggtggaggtagaggagagcagcgatggtgggat
cctatttggagagcagagcgcttgcgccagaaggctgctgaggttgaaaaggttgatgaa
aatgagtggtggacgaagatggaagatatggaacggagtggtcagcaggagctgattgtt
aagcgtaactatgggcgtgagggtcaaaatattcttgaggatatggctcatcaactaggc
ctttacttccatgcttacaacaaagggcgaactcttgttgtgagcaagatcccattacca
aattatcgggcagatcttgatgaatggcatggatccacacaacaagagattcatatgtca
actgagatacagcgaagggtgggaagcattttagccaactcaaaggaagatgttcctgct
gctgaatccattggtgcatcgagccaggcgaggccacaattgcttcctattggagaaatg
aggaactctaaatctcctttggcattggatgctctgaaggagagaattaatatcgaactt
agagacgagcaacataaggggagggacactccatcttccaaagaaatgctaggtcttagg
gaaacactacctgcctataagttgaagcatgaatttttgaaagccgtaaaaaacaatcag
gtgctggtagtttctggggagactggttgtggtaagactacgcagttaccacagttcatt
atagaagaagagatagaatcacttcgtgggactgaatgcaacataatatgcacacagcca
cgccgtatatcagccatatctgtagcttctcgtatttcttcagaaagaggtgagaatctt
ggagaaactgttggataccagatccgtttagaagcaaaacgttcggaaaagacacggttg
ctcttttgtacaactggtgtactccttaggcgattggttcacgaaccagaattgattggt
gtcagtcacatattggttgatgaaatacatgaaagaggcataaatgaggacttcctcatt
attatattgcgtgatcttcttccacatcgtccagatttgcggcttattttaatgagtgcc
acgatcaatgcagagatgttctcaaaatattttggaaatgctcctattattcacatacct
ggattcacatttccagtagccgaagtttttcttgaagacctgctggagaaatcatgttac
aacatcaaatctgattctattaacttcagtggaaattctaggagaaggagacagatggat
caaaagaaagataccctgactgagttgtttgaggaggttgacattgattctcacttcaaa
gcatataggtcttcaacacgacgttctcttgatgcctggtcgcctagtcaacttgattta
agccttgtagaagctacaatcgagtatgtttgtcagtatgaacgagatggtgcaattctt
gtttttctcactggttgggatgagatttctaagctactagataaaatcaagagcaacagc
tttttggggaattctaataaatttttattacttccattacatggctctatgcctacaata
aatcaacgtgaaatattcgagaggccaccaagtaacatgaggaaaattgtgattgcaaca
aatattgcagaaagcagtatcactatcaatgatgttgtgtttgtgattgattgtggaaag
gctaaagaaaccagctacgatgctctgaacaagctagcttgccttttaccgtcatggatt
tctaaggcttcagcacttcagagacgaggccgtgctgggcgtgtgcagcctggagtttgt
tatcgtctttacccgaggatcatttatgatgcgatgccccaatatcagttgcctgaaatt
cttcgaacactattacaggagttatgccttaacataaaaagtttacagcttgggaacatt
gcgtctttcttggccaaggccctgcagccccctgatcctctttctgttcaaaatgctatt
gatcttttgaagataataggagctttggatgatacggaggagctaacccctctaggtcat
catctttgctccttgcctgtggatcctaatattggaaaaatgcttcttttggcatccatc
tttcaatgtctggatcctgcattaacaattgcagcggctcttgcacaccgtgacccattt
gtccttccactcaacaggaaagaagaagctgatgaggcaaaaagatcatttgctggagat
tcatacagtgaccacattgcgctccttagggcatttgaggcatggcagcatgccaagcgt
aatggcagggaaaggcagttctgttgggagaatttcttatcccccataaccttgcagatg
atggaggatatgagaaaccaattttgtcgtctactctcagatattggcttccttaacaaa
ggaagaggactcaaggaatacaatgtctacagtgaggacgtggagatggtgtgcgccata
ctatgtgcaggcctttaccccaatgtcctgcagtgtaagagaagaggaaagaggacggca
ttctacagtaaagaggtgggccaggtagatatgcacccatcttctgtcaatgctgtggtt
caccaattccctctcccttacatggtctacagtgagaaggtcaaaacatccagcatatat
atcagggactcgaccaacatatccgactatgctttgctcctttttggtnggaatcttttg
gcaagccaaactggagaaggcatagagatgcttggaggttaccttcatttctcagcttcc
aagagtgtgttgcaactgatacagaaattgagatgggaacttgacaagcttcttcagagg
aagattgaagatcctgagctggacattccatctgagggcaaaggggttgtggctgctgct
attgaattactgaacaacccaaatgtgaagcaacacacaaatcgcaggggtagaagttga
DBGET
integrated database retrieval system
