Amborella trichopoda: 18439401
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Entry
18439401 CDS
T02990
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
atr
Amborella trichopoda
Pathway
atr03030
DNA replication
atr03420
Nucleotide excision repair
atr03430
Mismatch repair
atr03440
Homologous recombination
atr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18439401
03420 Nucleotide excision repair
18439401
03430 Mismatch repair
18439401
03440 Homologous recombination
18439401
03460 Fanconi anemia pathway
18439401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atr03000
]
18439401
03032 DNA replication proteins [BR:
atr03032
]
18439401
03400 DNA repair and recombination proteins [BR:
atr03400
]
18439401
Transcription factors [BR:
atr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18439401
DNA replication proteins [BR:
atr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18439401
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18439401
MMR (mismatch excision repair)
18439401
DSBR (double strand breaks repair)
HR (homologous recombination)
18439401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
DUF223
Fer4_10
Motif
Other DBs
NCBI-GeneID:
18439401
NCBI-ProteinID:
XP_006849629
UniProt:
W1PVB0
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MKVSLSPGAIDKVNNGDLNLKPIVQVLEVNPIGSNKDRYSTLLSDGVRAQEAMLASQLNQ
LVKSGRLVRGAIVQLIDYICNTVQNRRIIIVLNMEIIVSNSEIIGVPKQFTDLDIGPSNR
DAHNGRNGSTPVATNTSSLNLANNTSNCSVGQKASPSSDVFGRPAIQPPYQPPPVYSNKG
PIAKNEAPPRIIPISSLNPYQGRWAIKARVTAKADIRRYNNAKGDGKVFSFDLLDSDGGE
IRVTCFNALVDRFFDQIALGKVYMISKGSLKPAQKNFNHLNNNWEIFLESSSIVEPSMDQ
DDSIPKQQFSFKLINEIEGMESGSMADVIGVVISVNPSVTILRKNGMETQKRVLNLKDTS
GRTVELTLWGSLCNKEGQELHDMLDSGASPVLAIKASRVSDFSGKSLGTISSTQLFINPD
IPEARSLRVWFDCEGKRTISQPISQDFVSADWVRKNVSDIKYERLGFSDKPDWIDVKANV
TFIKTDSFCYTACPVIVGDRQCNKKITRSRGGLWHCERCDQDLEDCDYRYLLQIQIQDHT
GLTWVTAFQEAGEEIMGFPAKELYFLKYEEGDEQRFGEIIRSVVFSSFLFKLKVKEERYN
DEQRVKITVMKVEKQNFPSENKYLIDMIKKLSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttctctaagtccaggagccattgataaggtcaacaatggagatttgaatctg
aagcctatagttcaggtactcgaggtgaacccaatcggttcgaacaaggaccgttacagt
actcttctttctgatggcgttcgagctcaagaggccatgcttgcttcccagcttaatcaa
ctggttaaatcaggaagattagtcagaggagctatcgttcagttgattgattatatatgt
aatacagttcagaatcggagaattatcattgttctgaacatggaaataatagtgtctaac
tctgagataatcggggttccaaaacagttcacagatttagatataggaccttcaaataga
gatgcccataatggaagaaatggttcaacaccagtggcgacaaatacaagttctctcaat
cttgcaaataatacttcaaactgcagtgttggtcaaaaggctagtccctcatctgatgtt
tttgggcgaccagctattcaacctccctatcagcctcctccagtatactcaaataaaggc
cctatagctaagaatgaagccccaccaagaataattcccatctcatcactgaatccatat
cagggaaggtgggctattaaggctcgggtcactgccaaggctgatataaggcgttacaac
aatgccaagggagatggcaaagttttctcttttgatcttcttgactcagatggtggagag
atacgtgtaacttgtttcaatgctttagtggatcggttttttgatcagatagcgttgggt
aaggtgtacatgatatcaaagggaagcctcaaacctgcacaaaagaacttcaaccattta
aacaacaattgggaaatctttttggaatccagttcaatagtagagccatctatggatcaa
gatgactccataccaaaacaacagttctcttttaagttgatcaatgaaatcgagggcatg
gagagtggctcaatggcagatgttataggagttgtaatatctgttaatccttcagttact
atactaagaaagaatggcatggagacccaaaagagggttcttaatcttaaggacacatca
ggtcggactgtggagcttacgctctggggtagtctttgcaataaagaaggccaagagtta
catgatatgcttgactctggtgcttctccagttttagccattaaggcctcaagggtcagt
gattttagtggtaagtctcttggtacaatctcctcgacccaactattcataaatcccgac
atacccgaggctcgaagcctaagagtctggttcgattgtgagggcaagaggaccatttct
caaccaatatcgcaagattttgtatcagctgattgggttcgtaaaaatgtgagtgatatc
aagtatgaacgacttggattttctgataagcccgattggattgatgtgaaggcaaacgtc
acatttataaaaacagatagtttttgttacactgcttgccctgtaattgttggagatagg
cagtgcaataagaaaatcacaagatcaagaggcggtttatggcattgcgagaggtgcgat
caagatttagaggattgtgattataggtatcttcttcagattcagattcaagaccacact
ggcttgacttgggttactgcttttcaagaagctggagaagaaataatgggctttcctgca
aaggagttgtactttctgaagtatgaagaaggggatgaacaaagatttggggaaattatt
cgaagcgttgtctttagcagtttcctgttcaagctcaaggttaaggaagagagatataat
gatgagcagcgcgtgaagatcactgttatgaaggtagagaagcagaatttcccatcagaa
aataagtatttgattgatatgatcaagaagctctcagtttga
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integrated database retrieval system
