Amborella trichopoda: 18440333
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Entry
18440333 CDS
T02990
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
atr
Amborella trichopoda
Pathway
atr02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
18440333
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
atr02000
]
18440333
Transporters [BR:
atr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
18440333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_29
AAA_22
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18440333
NCBI-ProteinID:
XP_020526671
LinkDB
All DBs
Position
Unknown
AA seq
1917 aa
AA seq
DB search
MGGSTRQLKAMLRKNWLLKIRHPFVTAAEVLLPTVVMLMLIGVRTRVDTQMHPAQAYIRK
GMFVEVGGNDISPSFDVLLKLWFAKDEHLAFAPDTSQTRLMLNVLALRFPLLKMVGRIYK
DEAELETYLRSDDYGVHDPIRNCSYPMIKAAIIFHELGPLVFDYSIRLNHTWAFSGFPDV
KSIMDTNGPYLYDLQLGVDTVPTLQYGFSGFLTLQQVVDSFIISSAQRSSADLFHDGAII
GGLSLSGKPPTSKIADKDTEYPDISGDRVFQDEKHRWKPFQLSRTRIVPFPTREYTDDEF
QTIIKKVMGVLYLLGFLYPISRLISYSVFEKEHRIKEGLYMMGLKDEIFYLSWFITYTIQ
FAASAAIITLCTMTSLFQYSDKTVVFIYFYLFGLSAIMLSFLISTFFSRAKTAVAVGTLS
FLGGFFPYYMVNDPAVPMVLKVLASFFSPTAFALGTINFADYERAHVGVRWSNIWEDSSG
VNFLMCLLMMMLDTILYCVIGLYLDKVLPREHGVRYPWYFLFSRDFWQKSKSNQHHSHLD
AEVNMEHKRRAATLGIGKFSPVVEPISLDMKNLELDGRCIQIRDLHKVFISTKGKCCAVN
SLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKSTRTDMDVIRKQLGV
CPQHDILFTELTVKEHLEIYAILKGVSGDTSESEISGILNEIGLVDKAHTIVSALSGGMK
RKLSLGLALLGNSKVIILDEPTSGMDPYSMRSTWQLIKRMKKGRIILLTTHSMDEADVLG
DRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSTPGPSAAADIVLRHVPSATYLSDVG
TEISFRLPLTSSSSFETMFLELERCITKPEIIPRRNTSEGEHSVGIESFGISVTTLEEVF
LRVTGCDFDGFGLVEPNPNQYGENIVATEGIPWSTMSEGPNSEDCIGTCGNDHLKTCFSI
NRACGLILSTFISVLMLLKHHCCCSWSVINPIFKEHFKALLVKRSICARRDKKTVCFQLL
IPALFLFFGLLFLKLKPHPDQQSVTLTTSYFNPLLTGGGGGGPIPFNLTHAISRKVAAYM
KGGWIQRLKPRSYKFPNPEKALHDAVEAAGPVLGPALLSMSEFLITSLNESYQSRYGAIL
MDDLNDYGDMGYTVLHNCSCQHAAPTYINLMNNAILRFATGNKRMEIRTRNHPLPMSKSQ
HSQHQDLDAFSAAIIVSIAFSFIPASFAVPIVKEREVKAKHQQLLSGVSILAYWISTFVW
DFISFLFPMSLAIVLFYIFGLHQFVGTMGILPTTLMFLAYGSAIPSSTYCLTFFFSDHTI
AQNVILLVHFLSGLILMVISFIMGLVKATKSTNSLLKNFFRISPGFCLADGLASLALRRQ
GMKSESGEGTFDWNVTGASICYLGLESVLYFVCTIGLEYFSSHQLSFCTIKGWWTKGPKA
FSHIFTFKSISEPLIESLLGSHASGSSEEDADVQAERFRVYSGAAENSIIYLRDLHKVYH
GGRLNTYKVAVHSLTFSVRAGECFGFLGPNGAGKTTTLSIISGEEHPTEGTAYIFGNDIR
LHPKAARRHVGYCPQFDPLIDFLSVREHLELYARLKGVPIDITNRVVMEKLKEFNLLKHA
DKISSSLSGGNKRKLSVAMAMIGDPPIVILDEPSTGMDPLAKRFMWDVISHLSTRQGKTA
VILTTHSMSEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNYLELEVKPSEVCSSELDNL
CHRIQEALFDFPCHPRGILSDFEICIGGSDSISSADVSEISLSQEMVISIGHLLSNELRV
QKLLLNTSLANGAFCEQLSEQLTRDGGIPLRIFAEWWLADEKFSAINSFILSSFHGATFQ
GCNGLSVKYQLPYREGSSLADLFGHIERNRYKLGIAEYSISQSTLESIFNHFAANPL
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggggggttcaacgcggcagctgaaagcgatgctccggaagaattggctactgaagatt
cgtcatcccttcgtcactgcagctgaggttttactcccgacggtagtgatgctgatgttg
attggtgtgaggactagagttgacacacagatgcatcctgcacaagcgtatatacgtaag
ggcatgtttgttgaggtgggtggaaatgatatatctcctagttttgatgttcttcttaaa
ttgtggtttgccaaggatgagcacttggcatttgctccggatacgtcacagactaggctg
atgttaaatgttttggctttgaggtttcctctcctaaagatggttggaagaatttataaa
gatgaagctgagctagagacctacctacgctctgatgattacggtgtccatgatccaata
aggaattgctcataccccatgatcaaagcggcaataatatttcatgaacttgggccattg
gtattcgactacagtatacgactgaaccacacatgggctttctctggatttcctgatgtc
aaatctattatggataccaatgggccttatctctatgacttgcaattgggtgttgacaca
gtgcccacccttcagtatggcttcagtgggtttttgactctgcaacaagtagtggattct
ttcataatatcttctgcacaaagaagtagtgctgatcttttccatgatggtgcaattatt
ggaggattaagcttatcaggaaaacctcctacttcaaagattgctgacaaagatacggaa
tatccggatatcagtggggatagagttttccaggatgagaagcatcgctggaaacccttt
cagctttcaagaacaaggattgttccatttccaacacgcgaatacactgatgatgaattt
caaacaataatcaagaaagttatgggggtgttgtaccttttgggctttttgtatccaata
tctcggttaatcagctactccgtttttgagaaggagcacaggattaaggaaggcctgtac
atgatgggtcttaaagatgagatattctatctctcatggttcataacatacactatacag
tttgcagcgtcagcggccatcattacattgtgcacgatgaccagccttttccagtatagt
gacaaaactgtggtgtttatatatttctatttgtttggactcagtgcaatcatgctctca
tttttgatatcaacattcttctcacgagcaaaaacagctgttgctgtgggaaccctttca
tttcttggaggatttttcccttactacatggtcaatgaccctgctgtacccatggtgctg
aaggttttagcctcattcttttctccaacagcctttgcacttggaaccattaactttgct
gactatgagcgtgctcatgttggagtccgttggagcaatatctgggaggattcttctgga
gtaaacttcttgatgtgcctcttgatgatgatgcttgatacgattctatactgtgtgatt
ggactctaccttgataaggttctccctagagaacatggagtacgttatccatggtacttc
ctgttctccagggatttttggcaaaagagtaagagtaatcaacatcatagccatttggat
gctgaggtgaacatggagcacaagcgccgtgcagcaactctgggtattggaaaattttct
cctgttgtggagcccatcagcctagacatgaaaaacctagaacttgatgggcgatgcatc
cagattagagatctgcataaagtattcatatctacaaaggggaagtgctgtgcggtgaac
tccttgcagcttacgctgtatgagaatcagattcttgctcttttagggcataatggtgct
gggaaaagcaccacaatatctatgcttgttggcctgcttcctcctacttctggcgatgct
ttggtgtttgggaagagtaccaggactgacatggatgtaattcggaagcaacttggtgtc
tgcccacaacatgacatcctatttacagaattgacggtgaaggaacatttggaaatatat
gcgatcttaaagggtgtttctggggacacttcggaaagtgaaataagtgggatattgaat
gagattggcttggttgacaaggctcataccattgtgagtgcattatcgggtggaatgaag
cgaaaattatcattgggacttgcacttcttggaaacagcaaggttattatacttgacgaa
ccgactagtggaatggacccatactcaatgcgttctacatggcaattaatcaaaaggatg
aagaagggaagaataatcttactaacgacacactcaatggatgaggctgatgtgctcggt
gatcgcatagctattatggcaaatggttctttgaaatgctgtggaagttcattgttcttg
aagcatcattatggtgttggctacaccctgacattggtgaagagtacgccaggtccctct
gcagctgctgacattgttcttcgtcatgttccttctgcaacatatttgagtgatgttggc
acagagatatcctttcggcttcccctgacatcctcatcatcttttgagaccatgtttttg
gaattagaaaggtgcataacaaaaccagaaattattccaagaagaaacacgagtgagggt
gaacatagtgttggtattgagagtttcggcatctctgttactacattggaggaggtcttt
ttaagagtaactggatgtgactttgatggatttggacttgttgaaccaaatccaaatcag
tatggggaaaatatagttgcaacggaaggcattccttggtcaactatgtcagaaggtccg
aactctgaggattgcattggtacctgtggaaatgatcacttgaagacatgcttttcaatc
aatagagcctgtggcctgatattgtcaacatttatcagtgtattgatgcttttgaaacat
cattgttgctgctcttggagtgtgataaaccctattttcaaggagcattttaaagctctc
cttgtaaaacggtcaatctgtgctcgaagagataaaaaaactgtttgttttcagcttctt
atccctgcattgttcttgttctttggtttactcttcctgaagcttaaacctcatccagat
cagcagtctgttactcttacaacttcatatttcaatcctctgctgactggtggtggtggg
ggtgggcccattccatttaatctaactcatgcaatctcaaggaaggtggctgcttatatg
aaaggggggtggattcaaagactgaaaccaagatcatacaaattcccaaatccagaaaag
gcactccatgatgctgttgaagcagcaggacctgttctgggcccagcccttttgtctatg
agcgagtttctgattactagcttaaatgaatcgtaccagtcaaggtatggtgcaatttta
atggatgaccttaatgactatggagacatgggatacacggtacttcacaattgttcttgc
cagcatgcagccccaacatatatcaacttaatgaacaatgcaattttacggtttgctact
ggcaacaaaaggatggagattcgcactcggaatcaccctctgccaatgtcaaaaagtcaa
cactcacaacatcaagatttggatgcattttcggctgcaatcatagttagtattgctttc
tctttcattcctgcatcatttgcagtgcccattgttaaggagcgggaggttaaagccaaa
caccagcaacttttaagtggggtatctattcttgcgtactggatctccacttttgtttgg
gatttcatcagcttcttatttccaatgtcacttgcaattgttcttttctacattttcggg
ctccatcagtttgttggaaccatgggcattttgcccactacacttatgtttttggcatat
gggtcagcaataccgtcgtctacatactgcctcacatttttcttctctgatcacactatt
gcccagaatgtgattctcttagtgcactttttaagtgggctaattcttatggttatatca
ttcatcatgggacttgtaaaagcaaccaaaagtacaaattctttactcaagaactttttc
agaatatcaccaggattctgcttggctgatgggcttgcctcacttgcgcttcgaagacaa
ggaatgaagtctgaatctggcgaaggaacttttgactggaatgtgactggtgcatccatc
tgttacttaggacttgagagcgtcctatattttgtatgtaccattgggcttgaatatttc
tcatcccaccagttaagcttctgtacaatcaagggatggtggacaaaaggaccaaaggca
ttcagccacattttcacgtttaagagtatatctgagcccctgattgaatcattgttggga
agtcatgcttcaggttctagtgaggaagatgcggatgttcaggcagagagattcagagtc
tattctggtgctgctgagaatagcataatatatttacgtgatcttcacaaggtgtatcat
ggtggaaggcttaacacttataaagttgctgtccattctcttactttctctgttagagca
ggagaatgtttcggcttccttggaccaaatggtgcagggaagacaacaactttgtcaata
atatctggagaagaacatccaactgaaggaactgcatacatattcgggaatgacatacgt
ttacacccgaaggcagctcggcgacatgttggttactgcccacaatttgaccctttgata
gactttctcagtgtccgagagcatcttgagctttatgccagattgaaaggtgttccaata
gatataaccaatagggttgttatggaaaaattgaaagagttcaatttattaaaacatgct
gataaaatatctagctcccttagtgggggaaacaaacgcaaattgtctgttgctatggca
atgatcggggatcctcctattgtaattcttgatgaaccttcaacaggtatggatcctctt
gcaaagagatttatgtgggatgttatttcccatttgtcaaccagacaggggaaaacagct
gttattctaaccacacatagcatgagtgaagctcaggcactttgcacaaggattgggata
atggttggaggcaggcttcgatgcattgggagcccacaacatctgaaaacacgttttggg
aactatcttgaactagaggtgaagccatctgaggtttgctcctctgagctggacaattta
tgtcacagaattcaagaagctctttttgatttcccatgtcacccgaggggtatacttagt
gattttgagatatgcattggcggcagtgattccatttcttcagcggatgtatctgagatc
agtttgtcacaagaaatggttatcagcattggccacctgctatccaatgaactgcgtgta
caaaaacttttattaaacacctctcttgccaatggtgctttctgtgagcagttatcggag
cagctaactcgtgatggtggtattcctttgagaatatttgctgagtggtggttggctgat
gaaaagttctcagctattaattcttttattctctcatcatttcatggagcaacatttcaa
ggatgcaatggattgagtgttaaatatcagcttccataccgagaaggctcatcacttgct
gatctctttgggcacatagagagaaacaggtacaaactaggaattgcagaatatagcatc
agtcagtcaactctggagagtattttcaatcactttgctgctaacccattgtag
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integrated database retrieval system
