Amborella trichopoda: 18440528
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Entry
18440528 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: U-box domain-containing protein 13-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Pathway
atr04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
18440528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18440528
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18440528
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
U-box type E3
18440528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
zf-RING_UBOX
Arm_2
zf-Nse
zf-C3HC4_4
Neurochondrin
KAP
Cnd1
zf-C3HC4_2
zf-C3HC4
V-ATPase_H_N
TOR1L1_N
zf-NOSIP
Motif
Other DBs
NCBI-GeneID:
18440528
NCBI-ProteinID:
XP_011625822
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MAQHQHGGGVNTHSSSSAAAEDNNGDEISPASAAAEREEELVESLLGLVGEIGRMGGSEK
LCFPPPLNRKECGSFMRRILLLAPLFEELRDFLMASTPPDAVAAACRPLLPDLAAAIHKA
KEMLLLLSHPSTSKIRLVLEEKRITYEFHEVISQLEHSLGRMPYSQLNISDEVCEQVELV
LSQLKRAKERNGSLLDSELCADLFAIQTEPETDQKVLSRLADKLQLTTISTIEQEFKAFQ
TFIAEGNGNTIENHDVERMMLRLQSLKDSNDPQLDKASAAKNASSPEKKPADVVIIPDDF
RCPISLELMRDPVIVATGQTYERSCIQRWIDSGHKTCPKTQQTLPHLALIPNYVLRSLIA
QWCEAHGVEQPKNSGCSRSRKSCGGLAEEVPGDRAAIDNLVQLLSDGSPEEQRGASEELR
LLAKRNTDNRVCIAEAGAIPLLVNLMSTKDLRTQEHTVTAILNLSIYDNNKGAIVMAGAI
PHVVEVLKSGSMEARENAAATLFSLSLMDENKVTIGSSGAISALIQLLCEGSTRGKKDAA
TALFNLCIYQGNKARAVRAGIMDPLMKLLADPNSGMVDEALAILAVLASHHDGKVAIGRS
NAIPVLIDLLRTGLAHNKENAAAILLALCKKNPEHLKTLQRLGGFIPLSELVKNGTERAK
RKAGYLLEHMSRLDQMWEENVKGRRHSS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcccaacaccaacatggaggaggagtaaatactcattcttcctcttctgctgctgca
gaggataataatggagatgagatctccccagcttcggccgctgctgagagagaggaagaa
ttggttgagtctcttctcggacttgtaggggagatcgggagaatggggggcagcgaaaag
ctctgctttcctccgccccttaataggaaggagtgcgggagcttcatgagaaggatcctc
ctcctcgcccccctcttcgaggagctcagagactttctcatggcatctactcctccagat
gctgttgccgccgcctgtcgcccattgttgccggatttggctgcagcgattcacaaagct
aaagaaatgctgctgctcctcagccacccatccaccagcaagatccgcctggttcttgag
gagaagcgcatcacctatgagttccatgaagttatatcacagttggagcacagtcttgga
aggatgccatattctcagctcaatatatcagatgaagtttgtgaacaggttgaacttgtc
ctttcccaactgaaaagagccaaagaaagaaatggaagtctccttgattccgagctatgt
gccgacctctttgcaattcaaaccgagccagaaaccgaccaaaaagtgttgagcaggcta
gcagacaaactacaacttactactatctcaacaattgaacaggaattcaaagcctttcaa
accttcatcgcagaaggcaatgggaacacaattgaaaaccatgatgtagagcgtatgatg
ctcaggttgcagagcttgaaggactccaatgaccctcaactagacaaagctagtgctgcc
aagaatgcaagctcaccagagaagaaacctgctgatgttgttatcatccctgatgatttc
cgctgtcccatttcattggaattgatgagggatcccgtgatagtggcaactggacagact
tatgaacgctcctgcatacaaaggtggatagattccggacacaagacgtgtcctaagaca
caacagacacttccccatcttgcactcatcccaaactatgtgttgaggagcttgatcgca
cagtggtgtgaagcccacggtgtcgagcaacctaagaattcaggttgtagcaggtcacga
aagtcatgtggcgggttggcagaagaagtacccggtgatagagcagccattgacaatctc
gtacaactgctctccgatggatcccctgaggagcagcggggagcttctgaggagttgcgg
ttgctcgcaaagaggaacacagacaacagggtatgcattgcagaggcgggggcaatccca
ctcctcgtcaaccttatgtcaaccaaggacctcaggacacaagagcacacagtcaccgcc
atactaaacctctccatatatgacaacaacaaaggggccattgttatggcgggggcgatc
ccccatgtggtcgaggtccttaagtcaggcagcatggaagcgagagagaatgcggccgcc
acccttttcagcctttcactcatggacgagaacaaggtgacaatagggtcgtcaggtgca
atttctgccctcattcagttgctttgtgaagggagcactagaggcaagaaggacgcagcc
acagctttgtttaacctttgcatctatcagggcaacaaagcgagggctgttagggctggg
atcatggacccgctgatgaaactgctagcagacccaaatagtggcatggtcgatgaagcc
ttagcgatactagccgtgctcgcaagtcaccatgatggtaaagtggccataggaaggtct
aatgcaataccagttttgatagacttgttgagaacaggtttggctcataacaaggagaat
gcggctgcaatcctgctagccctttgcaagaagaatcccgagcatctcaagactttgcag
aggctcggaggattcataccattgtcagagctcgtcaagaatgggactgagagggcaaaa
aggaaggcgggttatttgttggagcacatgagcagactggatcagatgtgggaggagaat
gtcaaaggccggaggcattcttcatga
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integrated database retrieval system
