Amborella trichopoda: 18440605
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Entry
18440605 CDS
T02990
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18440605
09123 Folding, sorting and degradation
03018 RNA degradation
18440605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18440605
03041 Spliceosome [BR:
atr03041
]
18440605
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18440605
mRNA degradation factors
5'-3' decay
Lsm complex
18440605
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
18440605
Complex C
U2 snRNP components
18440605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Hfq
Motif
Other DBs
NCBI-GeneID:
18440605
NCBI-ProteinID:
XP_006850806
UniProt:
W1PQS6
LinkDB
All DBs
Position
Unknown
AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVTVELKNDIAIKGILHSVDQYLNIKLENSRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPPDGVDTELLHDATRREARAG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttttttcctatttcaaggaactcgttgggaaggaggttacagttgagctgaag
aatgatattgctataaaggggattttgcattcagtggatcaataccttaatattaagcta
gaaaactctagggttgttgaccaggacaagtacccacacatgctctcagttcggaactgt
tttatccgaggttcagtggttagatatgttttgcttccaccagacggggtcgacactgaa
cttttgcacgatgccacgaggcgagaagctcgtgctggttga
DBGET
integrated database retrieval system