Amborella trichopoda: 18440646
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Entry
18440646 CDS
T02990
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18440646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18440646
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
18440646
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
18440646
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
18440646
NCBI-ProteinID:
XP_006850847
UniProt:
W1PWB2
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MRDVNFAMTQTQKVRLKRALQCLRDCSVASSPVIVADTIPVNLEDNILKGHGTAELEGEV
VATLCGAVERVNKLVLVRPFRARYKPEIGDIVVGRVIEVAPKRWRLDINFIQDAILMLSS
MNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGSQNDGSLHLQARSQKYGKLEKGQLL
SVSPYLVKRRKQHFHYLEQYGVDLILGCNGYIWVGAHSDGGGKNEDFEDLSAKLEDKMEV
EVSPLAPHKEEASSVPLGTRENVCRLANAIRILSLLGFNISMELILDTVVASVTWNTTVR
DMLGGEFYTRIAEREAERRSSKRATQV
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcgggacgttaactttgcaatgacgcagacccaaaaggttcgactgaagagagctctg
caatgcctccgagattgcagtgtcgcatcttcacctgtcattgtggctgacaccatccct
gtaaaccttgaagacaacattctcaagggccatggaacagctgaacttgaaggtgaagtg
gtggcaactctatgcggtgcagtggaacgtgttaataaactggttttagttcgacccttt
agagcgaggtacaaacctgaaatcggtgatattgttgttggtcgcgtcattgaggtggct
ccaaaacgctggagattggatattaacttcatccaagatgccatattaatgctttcgtcg
atgaatttgccagatggcattcagaggcggcgaacggcagttgacgaactcaacatgcga
agtatctttgaagaaaacgacgtcatatgtgctgaagttcgtggttcccagaacgatgga
agtttacaccttcaagcacgaagtcaaaagtatggaaagcttgagaagggccagcttctc
tccgtctccccatatctggtgaaaaggcgaaagcagcatttccactatcttgaacaatat
ggcgtcgacctcatccttggctgcaatggctatatatgggttggtgctcactctgatggt
ggtgggaaaaatgaggattttgaagatctcagtgcaaaattagaggacaaaatggaagta
gaggtgagccctttagctccccacaaagaagaggcatcatcagttccattgggcacgaga
gagaatgtttgccggcttgccaatgcgatccgaattctctcgcttttgggcttcaatatc
tctatggaattgatccttgacacagtggtagctagtgtcacttggaacacaactgtgaga
gacatgctgggtggagagttttatacgaggattgcggagagggaagccgagagaagaagc
tcaaagagggcaacacaagtttga
DBGET
integrated database retrieval system
