Amborella trichopoda: 18440758
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Entry
18440758 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18440758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18440758
03041 Spliceosome [BR:
atr03041
]
18440758
03009 Ribosome biogenesis [BR:
atr03009
]
18440758
03016 Transfer RNA biogenesis [BR:
atr03016
]
18440758
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18440758
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18440758
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18440758
Complex C
U4/U6.U5 tri-SnRNP related factors
18440758
Ribosome biogenesis [BR:
atr03009
]
Eukaryotic type
Pre-60S particles
Helicases
18440758
Transfer RNA biogenesis [BR:
atr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18440758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Tox-REase-2
DUF2200
DUF8098
Motif
Other DBs
NCBI-GeneID:
18440758
NCBI-ProteinID:
XP_006850959
UniProt:
W1PYG0
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MEESPIPGKRKAEDDPEAPKSETESDPKRRNISRSCVHEVAVPSGYSSTTDESIHGTLSS
PFFKGEMAKTYPFTLDPFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMAFRERQRV
IYTSPLKALSNQKYRELAQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKE
VAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICKLHKQPCH
VVYTDFRPTPLQHYVFPMGGSGLYLIVDEKEQFKEDNYLKLQDTFAKKKTVADGNNNWKG
GGRIAKGGSASGDSDIYKIVKMIMERKFQPVIIFSFSRRECEQHALAMSKLDFNSQEDKD
VVEQVFRNAIQCLSEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKA
LFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIM
IDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEK
TLPDIGQRVSSLEKEASMLDESGEADVAEYHKLRLDIAQLEKKMMLEITRPERVLCFLLP
GRLIKVRDGGTDWGWCVVVNVVKKPPVSSASVPSALASMRSTSYIVDTLLHCASGLSANG
SRPKPLPPSPGEKGEMHVVPVQLGLVCALSSIRVSIPSDLRPIEARQSILLAVQELGTRF
PKGLPKLDPIKDMGIQDPEFVELVNKIEGLEQKLVAHPLHKSIQDEKHFKTFQRKAQVNH
EIQQLKSKMRDSQIQKFRDELRNRARVLKRLGHIDADGVVQLKGRAACLIDTGDELLVTE
LMFNGTFNELDHHQVVALASCFIPGDKSSEQIHLRTELAKPLQQLQDSARRIAEIQRECK
LEVNVDEYVESTVRPYLMDVIYCWSMGATFSEVIEMTDIFEGSIIRLARRLDEFLNQLKD
AAHAVGEVDLENKFAAGSQSLRRGIIFANSLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatctccaatacctggaaaacgaaaagcagaggatgatcctgaagcccccaaa
agcgaaactgaatcagacccaaagcgcagaaacatttcacgttcatgtgtccatgaagtt
gcagtcccttctggttactcttcgaccacagatgaatccattcatgggaccctctctagc
ccctttttcaaaggggaaatggcaaagacctacccatttaccctagacccatttcaacaa
gtatccattgcctgtttagagagaaatgaatcagttttagtttcagctcacacatcagct
ggtaaaacagcaattgcagagtatgcgattgccatggcatttagagagagacaaagggtt
atttatacttctccattaaaggcattgagtaaccaaaagtacagagaactagcccaagag
ttctctgatgttgggttgatgactggagatgtcaccctctcacccaatgccagttgtttg
gttatgaccactgaaattctaaggggaatgctttatcggggttccgaggttttaaaggaa
gtggcttgggttatttttgatgaaattcactatatgaaggatagagagaggggggtggtt
tgggaagagagtataatatttcttcctcctgctataaagatggtttttctatcagctacc
atgtctaatgccactgagtttgcagagtggatatgtaagctacataagcagccttgccat
gtggtttacactgattttaggcccaccccacttcaacattacgtgtttcctatgggtggg
tcgggtctttatctcattgttgatgagaaagaacagtttaaggaagataattatttgaaa
ttgcaagatacttttgcgaagaagaagacagtagctgacggtaacaacaactggaaaggt
ggagggaggatagctaaagggggctcagcttcaggggattctgacatctataagattgtg
aagatgatcatggagcgcaaatttcagccagtaattattttcagttttagtcgaagagaa
tgtgagcaacatgctttggctatgtccaaacttgattttaacagccaagaggataaggat
gttgtggaacaagtttttagaaatgcaatacaatgccttagtgaggaggatagaagttta
cctgcaattgaactcatgttgccacttctccaacgaggcattgcggtgcatcactcaggt
cttcttcctataattaaagaattggtggagcttctctttcaagagggacttgtgaaagct
ctttttgctacggagacttttgccatgggtttgaacatgcctgcgaaaactgttgtcttc
acatcggtcaagaaatgggatggtgatagtcatcgatatattggttctggtgaatatata
cagatgagtggcagagctggacgtcgtgggaaggatgaacgtggtatttgtatcatcatg
atcgatgagcagatggaaatgaatactctcaaagacatggttcttggaaagcctgcacct
ctagtcagtactttcaggctgagttactactctattctgaacttaatgagccgtgctgag
ggtcaatttactgctgagcatgtgatcaagaactcctttcaccagtttcagtatgagaag
acattgccagatattggacaaagagtttccagcctggagaaagaagctagtatgcttgat
gaatctggggaggctgatgtagcagagtaccataagctgagactagatattgctcaactt
gagaagaagatgatgttggaaataactagacctgaaagggttctatgttttcttcttcct
ggtaggctgattaaggttagagatggtggaactgattggggatggtgtgtggtagttaat
gtggtaaaaaagccacctgtgtcatcagcatcggtgccttctgcactagcctctatgcgc
tccactagttatatagtggacactttgctacattgtgcttctggtttaagtgctaatggt
tctcgcccaaagccgttacctcctagtcctggagaaaagggtgaaatgcacgtggttcct
gtccaattgggtttagtttgtgctttgagctccattagagtatctatcccctctgatctt
cgaccaatagaggcaagacaaagtatattgttggcagtgcaggagctgggaacacgattt
cccaaaggccttcctaagcttgatccgattaaggatatgggcatacaggacccagagttt
gttgaattggtcaacaaaattgagggactagaacagaagttagttgctcatccgcttcat
aagtccattcaagacgagaaacatttcaagactttccaaaggaaagcacaggtgaatcat
gagattcagcaactcaaatctaagatgcgggattcgcagatccaaaaattcagagatgag
ttgagaaatcgtgcacgggtgttaaagaggcttggccatattgatgctgatggtgttgtt
caactgaagggtcgggctgcctgcttgatagatactggtgatgaactgcttgttaccgag
ctaatgttcaatggtacatttaacgaacttgaccatcatcaagttgtggctttggccagc
tgcttcattcctggggataaatctagtgagcagatacatttgagaactgagcttgcaaag
ccattacaacagcttcaagacagcgcaagaagaattgctgagattcaacgtgaatgcaag
ttggaagtgaacgtggacgagtacgtggaatcaactgtacggccatatttgatggatgtt
atctactgttggtccatgggtgcaactttttccgaggtgattgaaatgactgatattttt
gaggggagcattatcagattggcgaggagattggatgagtttttgaaccagttgaaagat
gcagctcatgctgtgggggaggtggacctagagaacaagtttgcagctggtagccaaagc
cttaggcgtggcatcatctttgccaactctctttacctgtaa
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integrated database retrieval system
