Amborella trichopoda: 18440922
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Entry
18440922 CDS
T02990
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
atr
Amborella trichopoda
Pathway
atr00040
Pentose and glucuronate interconversions
atr01100
Metabolic pathways
Module
atr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18440922
Enzymes [BR:
atr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
18440922
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
TPS
DUF1565
Motif
Other DBs
NCBI-GeneID:
18440922
NCBI-ProteinID:
XP_020527168
LinkDB
All DBs
Position
Unknown
AA seq
332 aa
AA seq
DB search
MAGIFAILLLFLGSSTPGRARTLYGLDHGPSNFDVVRFGAVGNGKRDDSKAFLKAWESVC
QSTKPPTMTIPAGKTFLLNPTTFRGPCKSPAINIQVSGNILAPSSISSWGNDQEHWIHFK
CVDGLSIQGSGTIDGQGHAWWPIKSAQETHALSFDVCTNLKLRDLHIVNSQQRHIAIHNS
NTVYIKGLHINSPEDSPNSDGIHIQSSQHVNVENSFIATGDDCISIGDGTYDVNASKITC
GPGHGISVGSLGKDGSRSTAEMIHVKDSFFIGTKNGARIKTWQGGSGFARNIIFENLIFT
DVENPIIIDQYYCPNKGCKNQVNVSALISNLP
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcattttcgcaattttattactattcctgggcagttctacaccgggtcgggct
cgaactttgtatggactggatcatgggccgtcaaatttcgacgttgtccgtttcggagca
gttggcaatggcaaaagagacgattcaaaggcattcttgaaagcatgggaaagtgtatgc
caaagtacaaagcctcccaccatgactattccagcagggaaaacctttctccttaatcca
actacttttagaggcccgtgcaagtctcctgctatcaatatccaggtttcagggaatata
ttagctccaagttcaatctcctcatggggcaatgaccaggaacattggatccatttcaag
tgtgtggatggccttagcattcaaggaagtgggacaatagatggtcaaggacatgcatgg
tggcccatcaagagtgctcaagagacccatgcattgagcttcgatgtgtgcaccaatcta
aaactgagggatttgcacattgttaatagccagcaaagacatatcgcaatacataattct
aatactgtttacataaagggtctccatattaattctccagaagatagccccaactctgat
ggcatacatatccaaagctcgcaacatgtcaatgtcgagaacagtttcattgccactggt
gacgattgcatttccattggtgatggcacgtatgatgtaaatgcatccaaaatcacttgt
ggcccgggtcacggcatcagcgtcggaagtctcggtaaagatgggagtcgttcaactgca
gaaatgatacatgttaaggattctttctttattggaactaaaaatggggctcggattaag
acatggcagggcggttctggatttgccagaaacattatattcgaaaatctgatcttcaca
gatgtggaaaaccccatcatcattgaccagtattactgtccaaacaaaggttgcaagaat
caagtgaatgtatctgcactgatttcaaatttgccataa
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