Amborella trichopoda: 18441361
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Entry
18441361 CDS
T02990
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
atr
Amborella trichopoda
Pathway
atr03420
Nucleotide excision repair
atr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18441361
09124 Replication and repair
03420 Nucleotide excision repair
18441361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atr04121
]
18441361
03400 DNA repair and recombination proteins [BR:
atr03400
]
18441361
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
18441361
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
18441361
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_RFWD3
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
18441361
NCBI-ProteinID:
XP_006851542
UniProt:
W1PXX5
LinkDB
All DBs
Position
Unknown
AA seq
453 aa
AA seq
DB search
MWKVVDDRELGKIRPASFASHIQSARASSLHLSNRKEFVTAHKGAVNSFQVDLTEKRYLL
SGASDGSIAVYDVQHATDYNGGGLVAKHTSLFVVDKRQDFSHKYSVSSVAWYPVDTGLFM
TGSLDHYVKVWDTNTVQVEMNFKMPGKVYGIAMSSVSTSHMLIAAVSEDVQVRLCDISSG
AFSHTLSGHRDGVWAVQWSTSNEWVLVTGGCDGAIRFWDIRRAGCFRVLDQFQTQFGRRP
PLLKSSTKGSVPESSVASTSASAKVKVPQKKAPCGGGAKQSSINKGWTKGSVLQRQHPGM
LSSRNRASAHYGAVTGLKVTEDGMYLLSAGTDSRLRLWDIESGRNTLVNYEAMRLQTNKP
IQLAVTPDTELVFVPGLTAARAYDIWSGRTILTFRGHYECVNCCWFNSQDQELYTGSNDR
QILVWSPDSMVEEEVENNEKGPKRSLDEDCWSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggtggtggacgatagagaattgggcaagatcaggcctgcttcatttgcaagc
catattcaatcagctcgagcttcatctctgcatctctccaatcgcaaggaattcgtgacc
gctcacaaaggggctgtgaactcttttcaggttgatttgacagagaagcgttatttgcta
tctggagcttcagatggatcaattgcagtttatgatgtgcaacatgcaactgattacaat
ggaggaggactggttgcaaaacatacatcactctttgtggttgacaaaagacaggatttt
agccacaaatactctgtgtcatccgttgcttggtacccagttgacactgggttgttcatg
actggatcgcttgatcattatgtcaaggtctgggacaccaatacagtccaggtggagatg
aattttaagatgcccggaaaggtatatggaattgccatgtcctctgtatccacatctcac
atgttaattgctgctgtctctgaagatgttcaagttcgtttatgtgatatctcttctgga
gcattcagccacacactatctggccaccgtgatggagtttgggctgtgcaatggtctact
tcaaatgagtgggttttagttactggtggttgtgatggggcaataagattctgggatatt
agacgagctgggtgttttcgtgtgctggatcagttccagactcagtttgggaggcggccc
cctctcctcaaatcatccacaaaaggatcagtgcctgaatcttcggtggcgagcacctct
gcttcagcaaaagtcaaggtaccacaaaagaaagcaccttgtggaggtggggcaaaacag
tcctctataaataaaggttggaccaaaggttcagttctgcaaaggcaacatcctggaatg
ttgtccagtcgaaatcgtgctagtgcccactatggtgcggttactggattgaaagttaca
gaagatggaatgtacttgttaagtgcaggcaccgattcaagactaagattatgggatatt
gaatccggtcgcaacactttggttaactatgaagccatgcgcttgcaaactaacaagcca
atacaactagcagtcactccagatacagaacttgtatttgttcctggtttaacagctgcc
agggcgtatgatatatggtcaggtagaacaatcttgacattcagaggccactacgagtgc
gtaaactgttgctggttcaactcgcaagatcaggagctatacacaggcagtaatgacagg
caaattctcgtctggtcacctgattcaatggtcgaggaagaggttgaaaacaatgagaaa
ggaccgaaaaggtcattggatgaagattgctggagtgactag
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