KEGG   Amborella trichopoda: 18441362
Entry
18441362          CDS       T02990                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
atr  Amborella trichopoda
Pathway
atr03030  DNA replication
atr03410  Base excision repair
atr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18441362
   03410 Base excision repair
    18441362
   03420 Nucleotide excision repair
    18441362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atr03032]
    18441362
   03400 DNA repair and recombination proteins [BR:atr03400]
    18441362
Enzymes [BR:atr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     18441362
DNA replication proteins [BR:atr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    18441362
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      18441362
SSDB
Motif
Pfam: POL2_thumb DUF1744 DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2 DUF5688
Other DBs
NCBI-GeneID: 18441362
NCBI-ProteinID: XP_020527261
LinkDB
Position
Unknown
AA seq 2134 aa
MNDKSRSFGRRPGDNRDGRNRGGRAQKLARSKLFRSTEEELEGKLGFELFTEGEPRLGWL
LTFASSSWEDQDSNRVFSCVDLYFVSQDGSMFKSKYKFSPYFYAATKENMQLEVEAFLRR
RYEGQIADIEIVDKEDLSLKNHLSGLRKLYLKICFDTVQQLMHVKNDLVHIVERNKKKLD
AAEAYASIFNEKSEQKIHDYLDCIIDLREYDVPYHVRFTIDNDIRCGQWYNVYLSSTGVT
LEKSELLNRAEVRVCAFDIETTKLPLKFPDAEYDEIMMISYMVDGRGYLIINRECVSEDI
EDLEYTPKPEFEGRFKVKNVKNEEELLSQWFTHMRELKPGIYVTYNGDFFDWPFLESRAT
RHGISMNNEIGFRCDSNQGECRARFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDP
LEVNPEDMVRFAKEQPQTMASYSVSDAVSTYYLYMTYVHPFIFSLATIIPMPPDEVLRKG
SGTLCEMLLMVQAYKANVICPNKHQEEPEKFYNSRLLESETYIGGHVECLESGVFRSDLP
TKFRLDSSAYEQLISNLDRDLQHAIKVEGKMDLDSISNYDDVKNAIMEKLVNLRDESVRE
ESPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRNLEWVWRGETFM
AKRSEYYHLKQQMESELVDDGDGQSMKSFCDLPKAEQQSKFRERLKKYCQKVYKRVIDKP
ATELREAGICMRENSFYVDTVRSFRDRRYEYKDRNKVWKGKLAEAKASGNPMKIQEAQDM
VVLFDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVERIGRPL
ELDTDGIWCALPGSFPENFTFKTKDLKRKLTISYPCVMLNADVARNNTNDQYQTLTDPVS
KTYTTHSECSIMFEVDGPYKAMILPASKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGE
LKLIKVFQAEVFDKFLHGTTLDECYAAVASVANRWLDLLDNQGIDIADSELLDYISESST
MSKSLADYGEQKSCAVTTARRLADFLGDAMVKDKGLRCQYIVSCEPRGTPVSERALPVAI
FEDPEHMKFFVRKWCKISSDVGIRSIVDWSYYRQRLSSAIQKIITIPAAMQKVANPVSRV
MHPDWLHRKVREKEDRFRQKSIRDIFNTVNRDANLQKSHSTNEAVMDMEDIGNKENIAIQ
GLHPIVRCYQNNVGNSPGELFNSDNVLQQSDMQRQHQALVGLNQNSSLAESIHWSVDYEG
WLASKKRKWKDVREERKKQRLGNPLKQLHPTTGSRELAFGTKNRNSELGRNSVGSFFRSR
ELALLHSYWQIIQLVSSPQLGQFFAWVVVEGVMLKVPIKVPRAFYLNTRASITEGFPGNR
VTLTLPHGRPSFNLIEVKVDEYQFKAVARKLAAHLADPEVEGIYETKMPLEYSAILQIGC
VCKVDKTAQNRSIQDGWRLDELHMKTTTECPYLEQPISFFYLYHSMSEARAMYVVYTPAS
SNIHVVVVNPFQNKELSSNLLEKQFREACQVLSCEPSLPGSSVIIKVDYVGNAKDAERLL
QGALTEFRHEHPRPTVGVIECPNMQTLESHLPVLDDFPCVTIPCNARDNQYQALGWQIIA
AKIGMQRCAASSQWLKERIALAKYAHIPLANFELDWLLHTADVFFSRALHDQQQVLWISD
DGIPDLGGIHEDDSCFLDEVSSYNKFYLGSSTLVTLAILQINLQVFLLPVMRKVFALLLA
EFRKLGASIIYADFSKVIIDTGKLDLSSAQGYCDCLLKALQSRDLFEWIVLEPLRFWHSL
LFMDQYNYGGIQAKVPNGIPEDVSSTPNLNADYGSQLDIISSWNIAEYLPKATQDYFILI
VSEFIYEPWKEQAAIRAASRNGSFCTPSVTLSATETYETQVTEFLKKKISSYFLRKVLGF
IHDINRHIKGKKDIIDESISHGFPPLAGSHIHIGDPALEFIKHVCKVLALDQHVQHDVLV
MKKNLLKLIRVKEFAPEAQYRDPCLSFTLPNVICSYCNDCRDLDICRDAMLLDRDWRCAV
PQCGQPYNREEIENTLIQIVRQREHLYHLQDLVCVRCRGVKGAHLAEQCECGGFFRCFED
ATEFKAKMQVFLNIAMYHQFPILGEFVSWIMEIG
NT seq 6405 nt   +upstreamnt  +downstreamnt
atgaacgataaaagcaggagctttggccgaaggccaggtgataacagagatggcagaaat
cgaggaggtagggcacagaaacttgcgagatccaagctttttcgaagcactgaagaagag
ctagagggaaaattagggtttgagttgttcacagaaggagagcctaggcttggatggctt
ctgacctttgcatcttcctcgtgggaagatcaagactctaacagggtttttagttgcgta
gacctttattttgtttctcaggatggatctatgttcaaatctaaatacaaattttctcca
tatttttatgctgctacaaaggaaaatatgcaattggaagttgaagcatttctcagacgt
cgctatgaaggacaaattgctgacatagaaatagttgacaaggaagatctaagcttgaaa
aaccatctatcaggcttgcgtaaattgtacttgaaaatttgcttcgatactgtacaacaa
ttaatgcatgtgaagaatgatttagtgcacatcgttgaaaggaataagaaaaagcttgat
gctgcagaggcttatgcatctatcttcaacgaaaaaagtgagcaaaagatacatgattat
ttagattgcatcattgaccttcgagaatatgatgttccctatcacgttcgattcaccatt
gacaatgatatcagatgtgggcagtggtacaatgtttatttgtcttctactggtgttaca
ctggagaagtcagagctattaaatcgtgctgaagttcgcgtttgtgcatttgatattgag
acaacaaagcttccattaaagtttccagatgccgaatacgacgagataatgatgatttca
tacatggttgatggacgtgggtatctaatcatcaatagagagtgtgtttcagaggatatt
gaggatttagaatacactcccaaaccagaatttgaaggacgtttcaaagttaaaaatgta
aaaaatgaggaagagctcctttctcagtggttcactcatatgcgagaactaaaacctggt
atttatgtgacctacaatggtgatttctttgattggccgtttttggaaagcagagcaact
cgtcatggtattagtatgaacaatgagattggattccggtgtgatagtaatcaaggagag
tgtcgtgccaggtttgcatgccatttggattgttttgcatgggtgaaacgagacagttac
ctccctcagggaagtcaaggcttaaaggctgtcactaaggccaagttgggctatgatccc
cttgaggtgaatcccgaggatatggttcgcttcgctaaggaacaaccccagacaatggcc
tcttattctgtctcagatgctgtctcaacttactatctctacatgacatatgtccatccc
ttcattttttcacttgcaactatcatacctatgccacctgatgaggtattgcgtaaagga
agtggcacactttgtgaaatgcttctaatggttcaggcttataaggcgaatgtcatctgt
ccaaataagcaccaagaggagcctgagaagttctataacagtcgacttctggagagtgaa
acctacattggtgggcatgttgagtgcctggaaagtggagttttcaggtctgaccttccc
acaaaatttcggctcgactcatctgcatatgagcaattgatctccaacctagatcgagat
ctccagcatgctataaaagttgaaggcaagatggatttggattcaatatccaattatgat
gatgtgaagaatgctatcatggaaaagcttgtaaatttgcgtgatgaatcagtgcgagaa
gagagcccgcttatttatcatttagatgttgcagcaatgtatccaaatattattttaacc
aataggcttcagccaccatcaatagtcacggatgaggtctgcacagcttgtgatttcaat
cgtcctgggaaaacttgccttcgaaaccttgaatgggtttggcgtggagagaccttcatg
gcaaagagaagtgaatattatcatctgaagcagcaaatggaatcagagctggtagatgat
ggagatggtcagtcaatgaagtctttttgtgacctccctaaagcagagcaacagtcaaag
ttcagggagcgtttaaagaaatactgtcagaaagtatacaaaagggtgattgataagcca
gctactgagctccgggaagcaggtatatgcatgcgagagaattctttctatgttgatact
gtacgcagtttccgagacagaaggtatgaatacaaagatcggaataaggtgtggaaaggg
aagttagctgaggcaaaggccagtggaaatcccatgaaaatccaggaagctcaggatatg
gtggttctttttgactctctacagttggctcacaagtgtatcctaaactccttttatgga
tatgtcatgcgcaagggagcaagatggtattcgatggaaatggctggagtagtcacatat
actggtgcaaagatcatccaaaatgctcgcttgcttgttgaaaggattggtaggcctttg
gaactagacactgatggcatttggtgtgctcttcctggatcgttcccagagaattttaca
tttaaaacgaaagatttgaagagaaagctgacaatttcgtatccctgtgttatgctcaat
gctgatgtcgcacgaaacaacactaatgatcaatatcagacacttacagatcctgttagt
aagacatacacaactcatagcgaatgttcgataatgtttgaagttgatgggccatataag
gcaatgattttaccggcttccaaagaagaaggtgttttaattaaaaagcgttatgctgta
ttcaatgatgatggaacattggcggagcttaaaggttttgagattaaacgccgtggtgaa
ttgaagctcattaaagttttccaggctgaggtttttgataagttcctgcatggaacaacc
ttggatgagtgctatgcagcagtagcatctgtggccaaccgttggctggatcttctggat
aatcaaggaatagatattgcggatagcgagttacttgattacatatcagagtcgagcact
atgagcaaatctttggcagactatggggagcagaagtcatgtgctgtgaccactgctaga
cggcttgctgactttcttggagatgcgatggtcaaagacaaggggctgcgttgccaatat
attgtttcttgtgaacctagaggaactccagtaagtgagcgagctctcccagtggctatt
tttgaggatcctgagcacatgaaattttttgtgaggaaatggtgcaagatctcatctgat
gtgggtatcaggtcgattgttgattggtcctactataggcaacgtcttagttcagctatt
caaaaaatcatcactattcctgcagccatgcaaaaggttgctaaccctgtctcaagagtc
atgcatcctgattggttgcacagaaaggttcgtgaaaaggaagataggtttcgccagaag
agcatacgcgatatcttcaacacagttaacagagacgcaaacctgcagaaaagtcattct
accaatgaggctgttatggatatggaagatattgggaataaggaaaacattgccatccaa
gggcttcaccccatagttcgttgttatcaaaacaatgttggaaactctcctggagaactt
tttaattctgataacgtgctgcaacaatccgatatgcaaaggcagcatcaagctctagtt
ggtttgaatcaaaattcatcattagctgaaagcattcattggagtgttgattatgaagga
tggcttgcatcaaaaaaaagaaaatggaaagatgttcgagaggaacggaagaagcagagg
ctcgggaatcctttaaagcagttgcatcccacaactggctctcgtgaattagcttttggg
actaaaaatcgaaattctgagctggggagaaacagtgttggttctttcttcaggagtcgt
gagctagctcttttacattcctactggcagataatacagcttgtttcaagccctcaactc
gggcagttctttgcatgggtggtggtggaaggtgtcatgcttaaggttccaattaaagtt
cctagagcattttatctcaacactagagcttctatcacagaaggctttccaggaaatcgt
gtaactttaactcttcctcatggaagacctagcttcaaccttattgaggtgaaagttgat
gagtatcaattcaaggctgttgccaggaagcttgcagctcacttggcagatccagaagtt
gagggaatatatgaaacaaagatgccactagaatatagcgccatccttcagattggctgt
gtatgcaaggttgataaaactgctcaaaacaggagcattcaagatggttggcgtcttgat
gaattgcatatgaagactactacagagtgcccttatctggagcagcccatttctttcttt
tatttgtatcacagcatgtctgaagcaagggctatgtatgttgtatatacccctgcttca
agcaatatacatgtcgtggttgtgaaccctttccaaaacaaagagttgtcttcaaatctg
cttgaaaagcaatttcgtgaagcatgtcaagtactatcatgtgaaccttcattacctggg
agcagtgtcataatcaaggttgactatgtgggtaatgcaaaagatgcagaaaggcttctg
caaggagctttaactgagttcaggcatgaacatcctaggcctactgttggtgttatagag
tgtccaaatatgcagacattagagtcacacttaccagttttggatgatttcccttgtgtc
accattccatgtaatgctcgtgacaaccagtaccaggctcttggatggcagattatagct
gctaaaataggtatgcagcgatgtgctgcatcatcccaatggttgaaagagagaatagcg
cttgctaaatatgcacatatacctttagcgaattttgaacttgattggctacttcatacc
gctgatgtattcttttctagagccttgcacgatcagcaacaggtgctgtggatatctgat
gatggcatccctgatcttggaggaattcatgaagacgattcatgctttttggatgaagtg
agtagctataataaattttatctaggttcgagcacattggttacgttagctattctgcag
atcaatctacaggtcttccttttacctgtcatgcggaaggtgtttgcactattattggct
gaattccgcaagttaggtgcttccatcatctatgcagatttctctaaggttatcatagat
actggaaaactagatttatcatcagcccaaggttactgtgattgcctattgaaagcattg
cagtccagagatctttttgaatggattgtgcttgaacctctgcgcttttggcactcattg
ctctttatggatcagtacaactatggtgggattcaggcaaaagttcccaacggaattccc
gaggatgtgtctagtacacctaacctaaatgcggattatgggagtcaactagatatcatt
tcaagttggaatatagctgaatacttacctaaggcaactcaggattacttcatcctgatt
gtctctgagttcatctatgagccatggaaggagcaagctgcaattagagcagcctcgagg
aatggtagtttctgtactccatcagttacactttcagccactgaaacttacgaaacccag
gtcactgaatttctcaaaaaaaagattagctcttatttcttaagaaaggttcttggattc
attcatgatattaatcgccacatcaagggaaagaaagatatcatagacgaatccatatct
catggatttccaccgcttgctggttctcacattcatataggggatcctgcattagaattt
atcaagcatgtctgcaaggttcttgcccttgatcagcacgtccagcatgacgttctggtg
atgaagaaaaatctgttaaaattgataagagtgaaagagtttgctccagaagcgcaatat
cgtgatccatgcttgtcgttcacactgcccaatgtgatttgcagctactgtaacgactgt
cgggaccttgatatatgccgtgatgcgatgcttcttgatagagactggcgctgtgcagtg
ccccagtgtgggcaaccctacaaccgtgaagagatagagaataccctcattcaaatagtg
aggcaaagggaacatctctatcatttacaagacctcgtatgcgtaaggtgccgtggagtc
aagggtgcccatttagctgaacaatgtgagtgtggaggatttttccgatgctttgaagat
gctacagagttcaaggctaaaatgcaggtgttccttaacatagcaatgtatcatcagttc
cctatccttggggagtttgtatcttggattatggaaatcggatga

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