KEGG   Amborella trichopoda: 18441371
Entry
18441371          CDS       T02990                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
atr  Amborella trichopoda
Pathway
atr03082  ATP-dependent chromatin remodeling
atr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    18441371
   03083 Polycomb repressive complex
    18441371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atr03036]
    18441371
Enzymes [BR:atr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     18441371
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     18441371
   HDAC complexes
    Sin3A-HDAC complex
     18441371
    BRAF-HDAC complex
     18441371
    REST complex
     18441371
    SHIP complex
     18441371
    MiDAC complex
     18441371
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     18441371
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    18441371
  Chromatin remodeling factors
   NuRD complex
    18441371
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 18441371
NCBI-ProteinID: XP_020527328
LinkDB
Position
Unknown
AA seq 432 aa
MPSKDKVAFFYDGDVGNVYFGPNHPMKPHRLCMTYQLVLSYELQKKMEIYRPHKAYPQEL
AQFHSADYVEFLHRITPDTQHLYAKELVRYNLGEDCPVFENLFEFCQIYAGGTLDAARKL
NSKQCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHTRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKAIGEREGKYYAINVPLKDGIDDASFTRLFKT
IIAKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIKYFGPDYSLKIQNGNVQENLNSKSYLSSI
KVQVMESLRCIQHAPGVQMQEVPRDFYIPDSDEDEQNPDERVDQHTEDKQIQREDEYYDG
DNDNDHTMEDAL
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgccgtcgaaggacaaagtcgcttttttctatgacggagatgttgggaatgtttatttt
ggtccaaatcatcctatgaagccacaccgactttgcatgacataccaacttgttctctct
tatgagctgcaaaagaagatggagatatatcgaccacacaaggcatatcctcaggagctt
gctcagtttcactcggctgattatgtggagttcttgcaccgaataacacctgatacccaa
catctgtatgcaaaagagctagtgagatataatcttggtgaggactgccctgtgtttgag
aacttgtttgagttctgtcagatatatgctggtggcactttagatgctgcacgcaagttg
aatagtaaacaatgtgatatagctataaattgggcgggtgggctacatcatgccaaaaag
tgtgaggcgtcaggtttttgttatatcaatgatctggttttgggtattttggagcttctc
aaacatcatactcgagtgttgtatattgacatcgatgtccatcatggggatggggttgaa
gaagccttttattttacagatagggttatgactgtgagttttcacaagtatggggatatg
ttttttcctggaacaggggatgttaaggctataggagaaagagaaggaaagtactatgcc
ataaatgtccctctcaaggatggaatagatgatgccagttttactcgtctttttaaaacg
attatagccaaggttcttgaaacatatcaacctggtgctatagttctccaatgtggagct
gattctcttgctggggatcgcctaggctgcttcaacctttccattgatgggcactctgaa
tgtgtaagatttgtgaagaaattcaatttgccgctgttggttactggaggtggaggctac
acaaaagagaatgtggctcgttgttggactgttgaaacaggggttcttctggatacagag
cttccaaatgaaattccggataatgactatataaaatatttcggcccagattattccttg
aagattcaaaatggaaatgtgcaggaaaacttaaatagcaaatcctatctaagttcaatc
aaggtgcaagtcatggaaagcttacggtgcatccagcatgcccctggagtacagatgcaa
gaagtgcctcgtgacttttacatcccagattctgatgaagatgagcagaatccagatgaa
cgcgttgaccagcatactgaagacaagcaaattcaacgggaggacgagtattatgatggt
gataatgataatgatcacaccatggaggatgccttgtaa

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