Amborella trichopoda: 18441417
Help
Entry
18441417 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18441417 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
atr
Amborella trichopoda
Pathway
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18441417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18441417
03019 Messenger RNA biogenesis [BR:
atr03019
]
18441417
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18441417
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18441417
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2H2_9
Motif
Other DBs
NCBI-GeneID:
18441417
NCBI-ProteinID:
XP_006851712
UniProt:
W1PYN4
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MEMDSSRRPTDRSILKKPRLIEGVERDRGPNGLVERERPGLRGTSGPLLPRYRLDREGER
GRTEANEETDNPRENSGRGAQFQQQHHLQELLSQYKTALAELTFNSKPIITNLTIIAGEN
THAAKWIAATVCGNILEVPSEQKLPSLYLLDSIVKNIGGDYIKYFAARLPDVFCKAYRQV
DPSIHAGMHHLFRTWKGVFPPAPLQIIEKQLDFPPATNSSSSGAPASRPDSQRPPHSIHV
NPKYLEARQRLQQSSRAKGISADNNGVSLADHMESSDRAMTSGSPKQWPDLPVKNIQRPQ
SGEPLSESLFGKKPSTGYGDYKFASDRARRSDIRTVRSIERVVEKEEGLDRGRYGGVEGT
TTNPPFGPKNGHSMPQLPQRGLTDAYGSHRPSRPAHVVPQLPPPQDVAGKSGRGGISRNW
KNSEEEEYMWDDMNSRLTEHGGADRSSKDPWVSDDAGNPTSMTRGKWMPSESDPLDANWN
SLETSSRLEKPIVGEDGMSLKREPDDPQLQSHGQQDIDPRSRRDTSAESPSQGGGPSEFE
RRLLSGWPPQQNMSMSQLRPRIHPVDGLIQTGLPTSLASSSFGKAGNQSNLGMPLGSIPS
SFGPTSQMIPGSSGLFGHQRQQPQRPPSPSSQLPFHHLPYSSQIPLHQPPSLHDLDPMQQ
AQAQSFTQPGQKGSQAINQSTQNQDSFSPKRHNSSILQSLQAPLQIQPPLRFHGASSSLL
PPSKQGHHQLHFGQPPNLEIPHAQPPTFGPPRTSGYSGAGLPKNLPVEPQGQSSTETLLA
TILQSGILPLESTPSNTQPLSTSSSAIPRHSDSMSTPSNLNIQPPLPTGPPPIPQTSSLP
VTSVSSLLGPNPLGNMSSLSTQPVGMLQPPLPPGPPPASSIAGSSQASSTASGVSNQLSG
LLSSLVAKGLISAPTSESSNPPVSHAPTEVQHQTAVVATSATSMLSSRSLVSSTPPTSIP
IDEPELWVSTSISSAPPQAPRVDTKDPIAIEPNLIGIEFKPEVIRERHPSVISGLFDAMP
HRCSACGLRFNRQEELSKHLEWHASKNHEQSSGKRVLRNWYVSLRNWVEGDVGPSTGDAS
FPLDEKLSNVEKEEPVVPADESQCICILCGEPFEDYYSHERDEWMYKGATYMSGNGGDGS
SSPVSIVHVNCISKGAADDLLEAENDNVDKADG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggagatggatagctctcgaagaccgacggaccgttcgattctaaagaagcctaggtta
atcgagggcgtcgagagagatcgagggcctaatggccttgttgagagagaaaggccgggg
cttagaggtacctctggcccattgctccctaggtataggttagatagagaaggggagaga
ggaagaacggaggctaatgaagaaactgataaccccagagaaaattcaggtcgaggagct
cagtttcagcaacaacaccaccttcaagagctcttgagccagtataagactgctcttgct
gagctcacattcaattcaaagccaattatcacgaatctcaccattattgcaggtgagaac
actcatgctgcaaaatggattgcagctactgtttgcggtaacattctcgaggttccaagt
gagcaaaaacttccttctctctatcttctggatagcattgtaaaaaatattggaggagat
tatataaagtattttgcagccagactacctgatgtattctgcaaggcctatagacaggtt
gatccttctattcatgctggtatgcatcatcttttccggacatggaaaggggtgtttcct
cctgccccacttcagatcattgagaagcaattggattttcctcctgccacaaacagttcc
tcttcgggagcaccagcttcaaggcctgattctcagcgtccaccacatagcattcatgta
aatcctaagtacttagaagccaggcaacgccttcaacaatcaagcagggcaaaaggaata
agcgcggacaacaatggcgtttcgttggccgatcatatggagagttctgacagagctatg
accagtgggagtccaaagcagtggccggaccttcctgttaagaacattcagcgtcctcaa
agtggagagccattgagtgaatctttgtttgggaagaagcccagcacaggctatggagac
tataaatttgcatcagatcgtgctaggcgttcagacattagaactgtaagaagcattgaa
agggttgttgagaaagaggagggattggacaggggtagatatggaggagtcgaaggcact
acaacaaacccaccatttggaccaaagaatggacacagcatgccacaattacctcaacga
ggtcttactgatgcatatggaagtcatagaccatcaaggcctgctcatgtggttcctcaa
ctacctcctcctcaggatgttgctggcaaaagcggcagaggggggatttccaggaactgg
aagaactctgaagaagaagaatacatgtgggatgatatgaattctagattaacagagcat
ggaggggctgataggtcatctaaagacccttgggtttctgatgatgcagggaacccaaca
agcatgacaaggggcaagtggatgccatctgagtctgatcctctagatgccaactggaac
tcactggaaacttcatctcggttggagaagcccatagtcggtgaagatggaatgtctttg
aaaagagagcctgacgatccccaattacaatcccatggtcaacaagatattgatccaagg
agcaggagagatacttcagctgaatctccatctcagggaggaggaccctctgaatttgag
cgaagactgttatctgggtggccaccacaacaaaatatgagcatgtcccagttaagacca
aggattcacccagttgatggcttgatccaaacagggttaccaaccagtttggcgtcatct
tcttttgggaaagctgggaatcaatccaacctaggcatgcctcttgggtcaattccctct
agctttggacctacatcacaaatgatacctgggtcaagtgggttatttggacaccagaga
caacaacctcagagacctccttcaccatcttctcagcttccttttcaccatttaccttat
tcctctcagattccacttcatcaaccacccagtctgcatgatcttgaccccatgcaacaa
gcccaagcccagtcctttactcaaccaggtcaaaagggctcacaagcaataaatcagtcc
acacaaaaccaggattccttttctccgaagcgtcacaattcaagcattttgcagagtctc
caagcacctctacagatacaaccacctctacgttttcatggtgcttcatcttcattactg
cctccctctaaacaagggcatcaccagctccactttggacagccccccaatctagaaatt
ccacatgctcaacctccaacttttggacctcctcgaacttcaggttattctggagcaggt
ctcccaaagaacctacctgtggaaccccagggccagtcaagcacagagactttactggcc
actattttgcaaagtggaatattgccattagaatctactccttcaaatactcagccttta
tcgaccagtagttccgcaatccctaggcactctgattcaatgagcacaccatcaaatttg
aacatccagcctccgttaccaactggtccacctcccatcccgcaaacttcttctttgcct
gtaacatcagtctcatccttattgggtcctaacccacttggaaatatgtcatcattgtca
acgcaacccgttggaatgttgcagcctccactacctccgggcccacctcctgcttcttcc
attgcaggttcatcacaggcgtcaagcacggcaagtggtgtatctaatcagctttcagga
ctccttagctcactcgtggcaaagggcttgatttcagcaccaacctctgagtcatcaaac
ccccctgtttctcatgccccaacagaagttcagcaccaaaccgcagttgttgctaccagt
gcaacttcaatgcttagttctaggagcctagtttcttcaactccaccaacctctattcct
atagatgaaccagagctttgggtctctacttcaatctccagcgcccctcctcaagctcca
agagtagataccaaggacccaatagccattgaacctaatctcataggtattgaattcaag
ccagaagtaatccgggagcgacacccatctgtgataagtgggctttttgatgcgatgccc
catcgatgtagtgcatgtggcctgcggtttaatcgtcaagaagagcttagcaaacacttg
gagtggcatgcttcaaagaaccatgaacagagtagtggaaagagagtgttgaggaactgg
tatgtaagcttgaggaactgggttgaaggtgatgttgggccctcaactggagatgcttcc
tttcccttggatgaaaagctttccaatgtagagaaagaggaacctgtagtccctgctgat
gagagccagtgcatatgcattctatgtggtgagccatttgaagattattatagccacgag
agagatgaatggatgtacaaaggagccacatacatgagtggtaatggtggggatggcagc
tcttctccagtttccattgtacatgtgaactgtatatcaaaaggtgcagctgatgatttg
ctagaggctgaaaacgataatgtggataaggcagatggttga
DBGET
integrated database retrieval system
