Amborella trichopoda: 18441682
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Entry
18441682 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18441682 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18441682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18441682
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18441682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
a_DG1_N2
ECM1
Motif
Other DBs
NCBI-GeneID:
18441682
NCBI-ProteinID:
XP_020527487
LinkDB
All DBs
Position
Unknown
AA seq
1982 aa
AA seq
DB search
MLDRSILDDKMASVAAAINQAAPSKTLDSSLWWDSFVSLLTELENLSPPASHPPPSLTKK
LEDNKGWLLNTLAFFKPPSVESRSALDSPSIALGSHRVVINTKLTEVALRVGSLLDLNEV
QAYILVSRSIEVHQAAVDNKLEAYLPQIMIQYNLERQCLLKCTRQILLHALSIGSSAPET
DAIKKFAMELVHDGLERTAFETLMNLLSSKNPEQMLQDVDLANLWAEETLIEDNLILDIL
FLVYYEPFCACTSEQWKKLCSLFQEVLRGTCNIGRLAVSAEARRSLCHVKIQLLLMLLEN
LDFENLLLMVQDDVPLSRGHFGFSLEEVQEMDCLISGFCTLNMEEAGPLILAWAVFLCLL
SSLPEKEDSNMLMEIDHIGYVRQAFEAAPLKYILGILHSDMLGDSEGPTTGYKSVLKTLI
AAFIASYDVTDQLDNGSFNLIVDILCEIYHGQESLCLQFWDKSSFIDGPIRSLLGLLEEE
FPYQMVNFVRLLSALSEGSWPAECVYKYLDKMSGMTSLFEVSGAHLSAKTLQLVQTDRHL
QFHGIEGLFIPYGTVGAVMKVIDGNVALVRWELPQSGLLVLLVCLCQEFHQINFEEMLTI
SDLLCRMVTFSTALRIYLTDIGNSLPLRGSLMGGHVEENLRVDVVAIICNVVDNLVSNTC
DGKALSKCVTILGMLMKCSPAWVVAKMLRTKLFLPVTDGTLSGMWLLSGGLAKLLSFDID
QNGETMLVSVLDITMSLVEIGAENEVASSLVVFAIQFVLVNNEHWKYQSKHVRWKITFKV
FEIMKRCIKSTEELPKLGHVVKDIVLCDHSVHNALLQVLCITSRTLERLYVNRLYDPKEI
NSLQLALCSALDIVFATLSDLEEDAGMPIFHQALLCYTTKPVPVVTAVMSLISFFRNLEI
QVAATRVLSGLCFIAQKAHPYSIGILSFVSDDREVNDLNAAICYILSEERPRSEDLFIAT
MNLLTSAAHYQPAFLFALFSMEKMVELLSKRSNNMDDKHLSAASTLSSTLMDRPTVDLKV
LLLNFVQRSNHLLESHPRILLSVLNFLKTLWLAGDQYMKILEHLCSKMFWEHVSSFVSSI
TTRKPSSANMNLNSTLTLAYQYQCQSTVLEIMGNDIFLQQKLLHDKSLEHSKVSGDAKRN
AGNYSVSIAGAHPGPQHILSNWCEGSIMQDLIKEYTFSIYNHDIVHLAKRAVSLCIVHLI
SKVLVGDVKYLTLPFTAKIRMIYTKLSEQPAFIELLEQYAMQGYSKTEELHALVLSDLYY
HLQGEIEGRQVTYGPFKELMQYLLEIKFLQTNTHKASLDFHSPVNNAYMFLDPMHVQEDM
GLEYWDHSDWKASKSIAESMLQHMHKANMVVFLANSQKIVLKALTGVFLVYERSLMEKKP
ISDAGVISEASLESSLNCVCECMHELVEPLHPATSNSEFKLNFLAAQVELLFNLAECFYR
RVSLNTKRKQFLSVCVLVMKKASVILKLLLDIGPYTSGHDNSIKMLLSLLLVSAEFVLSI
SENSVSDRKDVDHASADICLVTLALLPVLCSCIENSQFCSISVALTDLILRSFLASSTWV
PVLQKHLPVLSLVRLLQLDKAFVSITVILNFVLTLARIKEGAEMLHSGNFLLCLKSLFER
FLNEKANTHYPEDNSLPGQICSLGMAIVTAMINSIGDDPSRISAMGDTMLYFFSEKAYVI
YSLSAPNIPEDDCRNKKARLRKTQTSLTMLRETEHALALTCRLARNNGTWVKAMKGMDSQ
LRERSIHLLAFISKGPQRIRGFSDESMPFVCPPILKEELQLCERPPFINSKHGWFSHLAW
ACISKSKMIEIKDSKTATRSMQQTYYSNVVAVQLYRIASLLLNFLSFQAKVAAKRAEEVG
IIDLAHFPELPMPEILYGLQDQAVAIVTELCGADKPNQRLPEVQNVCFLLLQIIEKALYL
ELCVSHICGLQRVSGRDEDFSKEIRALIRVTEDNAFLEASLKSLMQIVAIVYPGLLQSEG
ML
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatcgctccattctagacgacaaaatggcgagcgttgcagcggccattaaccag
gcagcgccctcaaaaaccctagattcatctttgtggtgggactcctttgtgtctcttctc
acagagcttgaaaacctgtcgccaccggcgtcacatcctcccccttcgctgacgaagaag
ctcgaggacaataagggatggcttcttaacactcttgccttttttaagccaccaagtgtg
gagtcaaggtctgctttggactctccaagtatcgcactgggttcgcatcgtgtggttata
aacacaaaattgacggaggttgctcttagagtcggctctctcctggatttaaatgaagtg
caagcgtacattttagtgagtaggtccattgaagtccatcaagcggctgttgacaacaaa
ttagaggcgtacctacctcagatcatgatccagtacaatcttgaaaggcaatgtctgctg
aagtgcactcggcagattctgctgcatgcactatctattggtagtagtgcccctgaaacc
gatgccatcaagaagtttgccatggagctagtacatgatggcctggaaagaacagcattt
gagaccctcatgaatcttctctcctctaaaaacccagagcaaatgttacaggatgttgat
cttgcaaatttgtgggcggaggagactttgattgaagataacctgatcttggacattctt
ttccttgtttattatgaacctttttgtgcttgtacttcagagcaatggaaaaaattatgc
tcactttttcaggaagtgttgcggggtacgtgtaacattggccggttagctgtgtcagca
gaagcaagaaggtccttgtgccatgtcaaaattcagttgcttctcatgcttttagagaac
ttggacttcgagaatcttcttcttatggtccaagatgatgtcccactaagtcggggccat
tttggattttctttggaagaggtgcaagagatggactgtttgatatcagggttttgtact
ttgaatatggaagaagcggggcctttgatccttgcatgggctgttttcctgtgcctttta
tcgtcacttcctgaaaaagaagattccaacatgctgatggaaattgatcatattggttat
gttcgacaagcatttgaggccgcaccattgaagtacattcttggaatcctccactcggac
atgttgggagattctgaggggcctactactggttataaaagtgttctgaaaacgctcata
gccgcatttattgcttcttacgatgtaacggatcagctggacaatggtagtttcaacctc
atagtggacatcctttgtgaaatttatcatgggcaggagtcactttgtttgcagttctgg
gataaaagtagttttattgatggtccaatcagatctctccttggtttactggaggaagaa
ttcccttatcagatggtgaactttgttcgcttattgtctgcacttagtgaaggaagttgg
cctgctgaatgtgtgtacaagtatttagataagatgagcgggatgacctccttatttgag
gtttctggtgctcatttatctgcaaaaactctacagttggtacaaactgaccgacatctt
cagtttcatggaattgaggggctttttattccttatggaactgttggtgcggttatgaaa
gttatcgatggaaatgttgctctcgttcgttgggagcttcctcagtctggactgctggtg
ctgcttgtatgtttatgtcaagaatttcatcagattaattttgaggaaatgcttacgatt
tcggatcttctttgccgaatggtcacgtttagcacggctttgcgcatatacttgacggac
attgggaattctttgccgttgcgaggttctttgatgggtgggcacgtggaagagaatttg
cgggttgatgtggtggctatcatttgcaatgtcgttgacaatctcgtctccaacacttgc
gatggtaaagcattgtccaagtgtgttactattctgggaatgttaatgaaatgttcccct
gcatgggttgttgctaagatgctgaggacaaaactctttcttccagttacagatggaaca
ttaagtgggatgtggttgctttctggtgggctggcaaaattgttgtcatttgacattgat
caaaatggggagactatgttggtctcagttctagacatcactatgtcgcttgtggaaatc
ggtgcagaaaatgaagtggcatcttcccttgttgtttttgctattcaatttgttttagtg
aataatgagcattggaagtaccaatcgaaacatgtccgctggaaaataacatttaaggtt
tttgagataatgaagagatgcatcaagtcaactgaggaattacctaaactaggtcatgtg
gttaaggatattgttttatgcgatcattctgttcacaatgccctcctccaagtactatgc
ataacaagcaggacattggagaggctatatgtcaaccgtctgtatgatcccaaggagatt
aacagcttacaacttgctctttgctctgcattggatatcgtgtttgcgacgctttctgat
cttgaggaggatgctggcatgccaattttccaccaggcattgttgtgctatacaacaaaa
ccagttcctgttgttacagctgtgatgtcactaataagcttctttcgcaatctggagata
caagtggctgcaacaagagtgctttctggactatgttttattgcacagaaggcacatcca
tactcgattgggattttaagctttgtcagtgatgatagagaggtaaatgatctgaatgct
gcaatatgttacattctttccgaggaaaggcctagaagtgaggatttatttattgctaca
atgaacctgcttacatctgctgcacattatcagcctgcttttctttttgctctgttttcc
atggagaaaatggtcgagttgctctccaaaagaagcaataacatggatgacaaacatttg
agtgctgcctcgaccttgtcatcaactttgatggatagaccaactgttgatcttaaggtt
ttactcttgaattttgttcaaagatcgaatcatctgcttgaaagccatcctcgtatactt
ctaagcgtgctcaacttcctgaagactctgtggcttgcgggtgatcaatatatgaagatc
ttggagcatttgtgctccaagatgttttgggaacatgtatcttctttcgtctcctcaatt
actaccagaaaaccttcttcagcaaatatgaacttgaacagcaccctaaccctggcttac
cagtaccaatgccagtctacagtcttagaaataatgggtaatgatatctttttacagcaa
aagttgttgcatgataagtcgcttgaacattccaaggtatcaggtgatgcaaaacggaat
gccgggaactattctgtgtcaattgctggtgctcatcccggtcctcaacacatattgtca
aattggtgtgagggttcaattatgcaggatctgatcaaagaatacacgttctctatatat
aaccacgatattgttcatctcgcgaagagggctgtaagtctttgtattgtgcatttaatc
agcaaagtcttggtgggtgatgtcaagtatttgactctgccgtttacagccaagataagg
atgatatacacaaagttgagtgaacaacctgcatttattgagctcttagagcaatatgcg
atgcaaggttacagcaagacagaagaactgcatgctttagttcttagtgatctttactat
catctacaaggagagatcgaaggtcgtcaggttacttatggtcctttcaaggaactcatg
cagtatcttctggaaataaaatttttgcagaccaacacccataaggcctctctagatttt
cattcacctgtaaataatgcttatatgttccttgatcctatgcacgtacaagaagatatg
ggattagagtactgggaccattcagattggaaggcatccaaatcaattgcagagagtatg
ttgcaacacatgcataaagcaaatatggtcgtttttcttgcaaattcccagaagattgtt
ctaaaagcattaacgggagtgttcttggtatacgagagaagtttgatggagaaaaaacca
atatctgatgctggagtgatttctgaagcatccctggagtcctctctgaattgcgtttgt
gaatgtatgcatgaattggtagaacccctacacccagcaacgagtaattctgaatttaaa
ctgaacttcttggcagcacaggtagaattactattcaaccttgctgaatgcttttataga
cgagtttcgctgaatactaaaaggaagcaattcttgtcagtttgtgtactggtcatgaaa
aaagccagtgtgatcctaaaacttttattggatattggaccctatacgtccggacatgat
aatagcataaagatgctcctttctcttcttttggtatcggcagagtttgttttgtcaata
tcagaaaactcagtttcagacagaaaggatgttgatcatgcatctgcagacatatgtctc
gtgactttggcactcctgccggtgctctgcagttgcattgagaattctcaattctgcagt
atttctgtggctctaactgatcttatactgagaagcttcctggcttcaagtacttgggtt
cctgttctacaaaagcaccttccagtactatctctcgttcgtttactccagctagataaa
gcttttgtctccataaccgtaatcttgaattttgtactgacacttgcacgtataaaagag
ggtgctgagatgcttcattcaggaaatttcttgttgtgccttaagtctttgtttgagcgc
ttcttgaatgaaaaggctaatacccattatcccgaggataacagtctccctgggcagata
tgtagtcttggcatggcaattgtcactgcaatgattaattcaataggtgatgatccttct
cgcatctctgcgatgggggatacaatgttgtacttcttctcagagaaggcatatgtgatt
tattcactatctgctccaaacattcctgaagatgactgtcgcaacaagaaggcccgtttg
aggaagactcaaacctctttgacaatgcttagggagacagagcacgctcttgccttaacc
tgtaggcttgctaggaataatggcacatgggttaaggccatgaaaggtatggactcccaa
ctaagagagagaagcatacatctcttggcttttattagcaagggaccacagcgcattaga
ggattctcagatgagagtatgcctttcgtctgccctcccatcctcaaagaagagttgcaa
ttatgtgagaggcccccttttattaacagcaagcatggatggttttcacatttggcctgg
gcttgtatatccaaaagtaagatgatagaaataaaggactctaaaactgccactcgaagc
atgcaacaaacatattattccaatgtagtggctgtacaattgtacagaattgcttctctt
cttctgaattttctgtcttttcaagctaaagtggcggctaaacgggccgaggaggttggg
atcattgacctagctcatttcccagagcttccaatgcctgagattttgtatggtttacag
gatcaggctgtcgctattgtcacggagctatgtggtgctgacaaaccaaatcaacgtctg
cctgaggttcagaatgtatgtttcttgctcttgcagataatagaaaaggccttgtatctg
gaactgtgtgtctcacatatctgtgggctccaacgagtatctgggcgtgatgaagatttt
tcaaaggaaatcagggccctgattcgagtcacagaggataacgcatttctagaagcgtca
ttgaagtccctgatgcagattgtggcaattgtctacccagggttattgcagtcagagggg
atgctgtaa
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integrated database retrieval system
