Amborella trichopoda: 18441943
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Entry
18441943 CDS
T02990
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
atr
Amborella trichopoda
Pathway
atr03015
mRNA surveillance pathway
atr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18441943
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
18441943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18441943
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
18441943
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
18441943
NCBI-ProteinID:
XP_006852230
UniProt:
W1PUL2
LinkDB
All DBs
Position
Unknown
AA seq
659 aa
AA seq
DB search
MDPMAEEQLDYEDEDYGANQKMPFQTGGAISALADEELMGEDDEYDDLYNDVNVGDGFMQ
SLQHQEPVQYESMGNGVQAPKEEPISTPPVNIPGVGHEEKGEKDAKLSGFSDLDQKKAFQ
EQASNQLAGASSGLKIRVSEPVSEPQPQASGFRNAPAPPAKGSGFNTAGAMDANKQLAQT
SSNAVPRVGPGPGPGIGAGPNANMNRMMGPGPNQAGAVIDTSARFGSENSNRLSHGGGES
GNTMLFVGELQWWTTDAELESVLSQYGRVKDLKFFDERASGKSKGYCQVEFYDPAAAAAC
KESMNGHVFNGRACVVAFASQHTLKQLTTNYLNKTQAQAQAQSQGRRPMNDGGGRAGGPS
YQGGDRNYGNKMGWGRGNQGVPNRGQGPAGLRGRPGGLTGKAMVGGPSGANPYGQALSAP
PLGGPPGGLLHPQGMMGSGFDPTYGAHLGRGSGYGGFSGPHFPGMLPSFSPMGTVGLPGV
APHVNPAFFGRGVSANGMGMMGSGAMDGHHGGMWGDSSMGGGVGWGNEEHGRRTRESSYG
DDGASDYGYGDGGHERGGGRSNPGREKDRGSERDWSSGPERRHRDDRDSDWDRDPRYKDE
KDGYSDHRQRERDWDNEDDWDRGRTSSRSRSKSRMMQEEDQRSRSKDVDYGKRRRVPSE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggatccaatggctgaagaacaattagactacgaggatgaggactatggagcgaaccag
aagatgccgtttcaaacaggaggagccatttctgctttggcagatgaggaactcatggga
gaagacgatgaatacgatgatctctataatgatgttaatgttggcgatggtttcatgcaa
tctctacagcatcaagagccagtccagtatgaatcaatgggcaatggcgtccaagctcca
aaagaagaacccatttccacaccaccagtgaatatacctggtgttggccatgaagagaag
ggggaaaaggacgctaagctctctggtttctcagatctggaccagaagaaggcttttcag
gagcaggcctcaaatcaactggctggggcttcgagtggtctgaagatcagggtttcagaa
ccagtttcggagcctcaaccacaggcttcggggtttcgaaatgcgcctgcacctcctgcc
aaggggtctggattcaatacagctggtgctatggatgccaataaacaattagcgcaaact
tcctccaatgctgtgcccagagttgggcctggccctggtcctgggattggggcagggcct
aatgccaacatgaacagaatgatgggcccaggtccaaaccaagcaggggcagttatcgat
acctcggcaaggttcggttccgaaaattcgaacaggttgagccatggaggaggggaaagt
ggcaatacgatgctctttgtcggtgagctccaatggtggaccactgatgcagagcttgag
agtgtgctttctcagtatggtcgggtaaaagacctcaaattctttgatgaaagggcaagt
ggcaaatcgaaaggctattgccaagtcgaattctatgatccagctgctgcagctgcttgc
aaagagagcatgaatggtcatgtattcaatggtagagcctgtgttgtggcctttgcttct
caacatactctaaagcagttgactacaaactatttgaacaaaacccaggcgcaagcccaa
gcccaatcccaaggtaggaggcccatgaatgatgggggtggtcgagccggtgggccttct
tatcagggtggcgataggaactatgggaacaagatgggttggggtcgaggaaaccaagga
gtaccaaaccggggccaagggcccgctgggctcaggggaaggcctggcggacttactggt
aaagcaatggttggaggaccaagtggggcaaatccatacggtcaagctctttcagcccca
cctcttggggggccacctggtgggcttctacacccacaaggaatgatgggttcaggtttt
gaccccacatatggtgcccacttgggtagaggaagtggctatggtggtttttcaggcccc
cattttccaggcatgttgccatccttctcgcctatgggcaccgtggggttacctggagtt
gccccccatgtcaaccctgcattttttggacgcggtgtctcagcaaatgggatgggtatg
atgggaagcggggccatggatgggcatcatgggggcatgtggggtgattcaagcatgggt
ggtggggttggttgggggaacgaggagcatggacgtagaactcgagaatcaagttatggg
gacgatggggcatcagactatgggtatggtgatggtggtcatgagagaggagggggaagg
tcgaatccagggagagagaaggatagggggtcagagcgtgattggtccagtggtcctgag
aggaggcatagggatgatagggattcagattgggatagggatccgcgttacaaggatgaa
aaggatgggtattcagaccataggcagagggagagagactgggataatgaagatgattgg
gacagggggaggacatcgtcgaggtctaggagcaagtcgcgtatgatgcaggaggaggat
cagaggtcacggtcaaaggatgtggattatgggaagaggcggcgggtcccatcagagtga
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integrated database retrieval system
