Amborella trichopoda: 18441978
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Entry
18441978 CDS
T02990
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
atr
Amborella trichopoda
Pathway
atr00040
Pentose and glucuronate interconversions
atr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18441978
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18441978
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
18441978
NCBI-ProteinID:
XP_006852264
UniProt:
W1Q050
LinkDB
All DBs
Position
Unknown
AA seq
409 aa
AA seq
DB search
MPTLSMSAISLFLLCFFLYTTCISSRVLPQVQEPESVVEEVERSLNHSRRNLGYLSCNTG
NPIDDCWRCDPDWATNRQRLADCAIGFGKNSVGGKGGEIYTVTDPSDDNPVTPKPGTLRY
AVIQDEPLWIIFARDMTITLKEELIMNSYKTIDGRGASVHIANGPCITVQYVTNIIIHGI
HIHDCKQGGNAMVRDSPNHYGWRTLSDGDGVSIFGGSHIWVDHCTLSNCRDGLIDAIHGS
TAITISNNYMTHHDKVMLLGHSDSYAQDKNMQVTIAFNHFGEGLIQRMPRCRFGYFHVVN
NDYTHWEMYAIGGSASPTINSQGNRFLAPDDRFNKEVTKHEDAPESEWKNWNWRSEGDLM
LNGAFFTPSGAGASSSYNRASSLSARPSSLVGGITVSAGALNCKKGSRC
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgccgacactctccatgtctgcaatctctctcttcttactctgtttctttctctacaca
acctgcatttcctctcgtgtgctccctcaggtgcaagaaccagagtcagtagttgaagaa
gtggagaggtctctcaaccactcccgtcgaaaccttgggtacctatcgtgcaacaccggc
aatcccattgacgactgctggcggtgcgaccccgactgggctaccaaccgccaacgcctt
gccgattgtgccatcggcttcggcaagaactcggtgggaggcaagggcggcgaaatctac
acagtcaccgacccctccgacgacaatcccgtcaccccaaagcccggaaccctaagatat
gcagtgattcaagatgagcctctatggatcatttttgccagagacatgaccatcactcta
aaagaagagcttatcatgaattcatacaagaccatagatggaagaggagccagtgttcat
atagccaatggcccatgtattactgtacagtatgtgaccaacatcattatacatggaatt
catatacatgactgtaaacaagggggaaatgccatggttagggactcgcctaatcactac
ggttggaggactctatcggacggtgatggggtgtccatatttgggggaagccatatttgg
gtggaccattgcactttgagcaattgcagggatggtctgattgatgctatacatgggtct
actgctattactatttcgaataactatatgacccaccatgataaggttatgctgttgggg
catagtgattcttatgcgcaggataagaatatgcaggtcactattgcttttaatcacttt
ggggaaggcctaattcaaaggatgcctaggtgtaggtttggttatttccatgtggtgaac
aatgattatacacattgggagatgtatgcaattggtggaagcgcatcaccaaccattaat
agtcaaggaaatagatttcttgcacccgatgatcgctttaacaaagaggtgacgaaacat
gaggatgcgccagaaagtgagtggaagaattggaattggagatcagagggagatttaatg
ttgaatggtgcattctttacaccatcaggcgcaggggcttcttcaagctacaacagggcc
tcaagcctatcagcaaggccctcttctttagtggggggcatcaccgtgtcggcaggagca
ctcaattgcaagaagggctcacgttgctga
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