Amborella trichopoda: 18442229
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Entry
18442229 CDS
T02990
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X4
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18442229
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18442229
Spliceosome [BR:
atr03041
]
Complex C
Other components
Complex C specific factors
18442229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
Cas3-like_C_2
AAA_11
Helicase_RecD
nSTAND3
AAA_7
AAA_23
TrwB_AAD_bind
AAA_29
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
18442229
NCBI-ProteinID:
XP_006852514
UniProt:
W1Q0L6
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSRFWRPGSERPQPSSLSVLEDDEPGFLPFSTLASNSSYGYGGLERHRQRLPVFKYRTAI
LYLLETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVVVCTQPRRLAVQTVASRVAEE
MDVKLGEEVGYTIRFEDLTKSAVTRIKFLTDGVLLREMMDDPLLSKYSVVMVDEAHERSL
STDMLLGLLKKIQRRRPELRLIISSATIEAKSIAAFFNQSKKKLPASRDFGPSREPAILS
VEGRGYDVQIHFLEEPVSNYLQAAVSTVLDIHNQEPMGDVLVFLTGQDDIDAAVQMLTDE
AQNLAAHRSGLLVLPLYAGLSRAEQELVFSPTPRGKRKVVIATNIAETSLTLEGMVYVVD
SGFSKQRFYNPITDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYFESEMPLEG
IPEMQRSNLVSCVIQLKALGIDNILGFDWLASPSPEGMIRALEVLYSLGILDEDSKLTSP
TGFQVAEMPLDPMLSRMIISGSQFGCSEEMIIIAAFLSLQSIWVIGRGTQKELDEAKQGF
AVAEGDHITYLNVYKGFLLSGKSSQWCHKNLINYQAMKKVLEIREQLHKLVQRLGLVLKS
CGQDTQVVRKAITSGFFAHACRLESSSHGGMYKTIRTSQEVYIHPSSVLFRVTPKWVVYH
SLVSTDCQYMRNVIAVDSSWFTELAPHFFQI
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggttttggaggccaggctccgaaaggcctcagccgtcttctctctctgtcctt
gaagatgatgaacctgggtttcttcctttctcgaccctcgcttcaaactcgagctatgga
tatggtgggttggagaggcacaggcagagactccccgtgttcaagtataggactgctatt
ctgtatcttttggagacccatgccactaccatcattgttggcgagactgggagtggcaaa
accactcaaatcccccagtatctcaaggaagctggctgggcagatggtgggcgggtagta
gtttgtacccaacccagaagattggcagttcagacagtggcttcaagggtggctgaggag
atggatgtcaagcttggagaggaagttggatacacaatacgatttgaagatttaaccaaa
tcagctgttaccaggatcaaattcctaacagatggtgtactactacgagaaatgatggat
gatcctcttttgtcaaaatacagtgttgtaatggtagatgaggcccatgaaagatccctt
tcaacagacatgttattggggctgttgaaaaagattcaacgtcgtagacctgaattacgt
ttgatcatttcatctgcaacaattgaagcaaaatccatcgctgctttcttcaatcaaagt
aaaaagaagctacctgcgagtagggactttggacctagtagagaacctgccatactatca
gttgaaggcaggggatatgatgtccagattcattttcttgaggagccagtatccaattat
ttgcaagctgctgtctccactgtgttggatatccataatcaggaacccatgggtgatgtc
cttgtcttcctcacaggtcaagatgatattgatgctgctgttcagatgctaactgatgaa
gctcaaaatctagcagctcaccgttcaggattgcttgttctgcctttgtacgcgggactt
tcacgtgcggaacaggaactggtattttctcccacacctcgaggaaagaggaaagttgtc
atagcaactaatattgcagagacatccttgacattagagggtatggtctatgttgtggat
tctgggttttcaaagcaacgtttctataatccaattacagacatcgaaagcttagtagtg
gcgccgatatcaaaggcgtctgctagacaaagagctggaagagctggtagagtgaggcct
ggaaagtgttttagattgtatactgaggaatactttgaaagtgaaatgcctctggaggga
atcccggagatgcaaaggtccaatcttgtttcatgtgttatccagttaaaggcccttgga
atagataatatattgggctttgattggttggcttcaccatcaccagaggggatgattaga
gcacttgaggttctttactcattgggcatcctggatgaagattctaaactaacttctcca
actggtttccaagttgcagagatgccactggatccaatgctatctagaatgatcatatca
ggaagtcagtttggttgctctgaggagatgatcataattgcagcatttctgtctttgcaa
tccatctgggttattggaagaggaacacaaaaggagttagacgaggcaaagcagggattt
gctgttgcagagggtgaccacattacctacctaaatgtatataaaggattcctactttca
ggtaaatcgtcccaatggtgccacaagaacttgataaattatcaagccatgaagaaagtc
ctagaaatcagagaacaactccataaattggtgcagcgccttggtcttgtcttaaagtct
tgcggccaagacacacaggtggtaagaaaggcaattacatctggattctttgctcatgct
tgtcgcttggagagttccagtcatggagggatgtacaaaacaatcaggacttctcaagag
gtttacattcatccatcatctgttttgttcagagtgactccaaagtgggttgtctaccat
tcccttgtgtctactgactgtcagtatatgcgcaatgttattgctgtggactcctcctgg
ttcactgaattggctcctcacttctttcaaatatag
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