Amborella trichopoda: 18442348
Help
Entry
18442348 CDS
T02990
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
atr
Amborella trichopoda
Pathway
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
18442348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18442348
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
18442348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
VHS
Muramidase
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
18442348
NCBI-ProteinID:
XP_006852629
UniProt:
W1Q0S4
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MATDGGKLSSLIEKATHSTSRELDSSLLNSIKAIVKSSDANVHVTVETLMENMKKNHSQV
RYLALLIIDELFMRSKLFRSLLVVNFDGFLGLSTGFRRNMPLPPPASIASILRSKSIELL
EKWNDSFGCHYKQIRLGYDYLKNVLRFQFPNLPETAARLRHERREREIRSKEILVNKFEN
LKSNYSSIKGEIRSTSDEISECFEIISGTNSKDNKFSCDSVDDENAVEESTSLAMRRIRL
ESLREGMIVHENSDNKAVFDMLRELYKLLTSKHLKTVQDSISVLVRVDASDVRFRDSALK
ELIDIRNDLQLAKKRCEELGCVAPDDDENRILWEEGKIEVESNENSNLSGEANKDMVYNS
YGDESKNDASTSGKESIDEETIVAGDGFGPSSPRQQLLAKAPVMTWGSFLDSWGMVRDVP
ANQRGMELECHWGRVDYDAVIPAEKIAELNVQMTYYNEQHGEIRPCFAPLKKGGLCQRRD
LRVCPFHGPIVPRDVEGNPIIANTSQKHDSIDIGGPSILKTSTKDSDVSFQPSDLETLTA
EELAKQAVKNVRTREGKEREKDKNEKRALKRAKLAKVREHNEMVLRQSALASTSQGLGEV
MGEDIEALHHTSSEYKEKKQTLASMLRKKVTPRDRLARRLLNAHATEATVRQLTHGEDSN
YREAFPNQW
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgatggtggaaagctttcatcgctgatcgagaaggctactcattccacttcc
agagagctggactcttcccttctcaactccataaaagccatagtcaaatcctctgatgcc
aatgtgcatgtcacagtcgaaaccctaatggagaacatgaagaagaatcactcacaggta
cggtaccttgcgctgcttataatcgatgaattatttatgcgttcaaagcttttcagatcc
cttcttgttgttaattttgatgggtttttgggtctgagcactggctttagaagaaatatg
cctcttccacctcctgcttccattgcatccatcttgcgttcaaaatccattgaactcttg
gagaaatggaatgattcgtttggttgccattacaagcagattagattaggttatgattac
ttaaagaatgttcttagattccaattccccaacttgccagaaacagcagcaagattgcgg
cacgagagaagggaaagggagatcagatcaaaggaaattctagtgaataagtttgagaat
ctaaagagcaattactcatcaatcaagggtgagattcggtccacttcagatgaaatctct
gaatgttttgagattatctctggcacgaattcaaaagacaataaattcagttgtgactct
gttgatgatgaaaatgcagtggaagagtctacatctttagctatgcgccgcatacgttta
gagtcattaagagagggaatgattgtccatgagaacagtgataacaaagcagtctttgac
atgttgagagaattatacaagcttctgacttctaagcatttgaagaccgtacaggattcg
atctctgttctagtgagggttgatgcatctgatgttaggtttagagattctgcactaaaa
gagttaattgacattcgaaacgacctccaattagcaaaaaagagatgtgaggaactgggt
tgtgttgctcctgatgatgacgagaacaggattttgtgggaggaaggtaagattgaagtt
gaaagcaatgagaacagtaatctatctggtgaggcaaataaagacatggtttataattca
tatggtgatgagtcaaaaaatgatgcctctactagtggaaaagaatcaattgatgaagaa
accattgttgccggagatggttttggtccttcttctccgaggcagcagctcttggccaaa
gccccagttatgacgtggggttcatttttggattcttggggtatggtccgtgatgtacca
gcaaatcagagggggatggaactcgagtgtcactggggtagagtggattatgatgctgtt
attcctgctgaaaaaattgcggagctaaatgttcaaatgacgtattacaacgaacaacat
ggtgaaatcaggccatgtttcgctcctttgaagaaagggggactctgtcaaagaagggat
ctgagagtttgcccatttcatggacccattgtacctagagatgtagaaggaaatcctatc
atagcaaacacatctcaaaaacatgattctatagacattggtggcccctctattcttaaa
acgagtaccaaagatagcgatgtctcatttcaaccttctgatctagaaacattaactgct
gaggaacttgctaaacaagcggtgaagaatgtgaggactagggagggaaaggagagagag
aaggacaagaatgagaagagggctttgaaacgtgcaaagcttgcaaaggttcgggaacac
aacgaaatggttctcaggcaatctgcacttgcctcaacttcacaaggcctaggagaagtc
atgggagaagacatagaagcactacaccataccagttcggagtacaaagagaaaaagcaa
acacttgcctcaatgcttcggaagaaggtgacgcctagagataggttggcaaggaggctt
ttgaacgcacatgcaactgaggcgacagtgagacaactcactcatggcgaagactcgaat
tacagggaggcttttccaaatcaatggtag
DBGET
integrated database retrieval system
