Amborella trichopoda: 18442422
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Entry
18442422 CDS
T02990
Name
(RefSeq) uncharacterized protein LOC18442422 isoform X1
KO
K06100
symplekin
Organism
atr
Amborella trichopoda
Pathway
atr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18442422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18442422
03019 Messenger RNA biogenesis [BR:
atr03019
]
18442422
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18442422
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
18442422
U7-dependent histone pre-mRNA processing factors
18442422
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
18442422
NCBI-ProteinID:
XP_011626437
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MAATNPRSQAISLLVAAKNHNDLAVKLSSLRQARDILISSDPTVAAELIPYVADLQDSPD
SLVRKTLAELIGDLGLMVGERICMLVPVLVAFLKDNSPDVVKQTIVSGSKLFRNSLEDIA
LQFLKFGKVERWLEELWLWMMKFKDAVCDTALGPCTVATKLLAVKFLETLILLFTPEAND
CQAPSPLELKEGRVRDFNMSWVVRGHPILDLAMLTQVANNSLGLLLDLLQSSNVQKLPTS
LIIVLINCLAAVAKKRPLHYSRVLPALLGFDSDTCKGGHSVSIQHSLKTSFLGFLKCTHP
VVLSSRDRLLVALRAINAGDVADQVVRQVDRMVKYAERTARDLRFGKDELLAGDPIRKRP
LAPDDGADTNNDDIPAKRTRLDLLSSPDQPSQLINDQLPDSGLINGTSGPASLLGSEMTP
VQQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVMANMKYLPKGPPPLSTRLANSQ
AASPWPPGLASDLIPSSGPASSSLNSPSLDACASPSLLSDSKRDPRRDLRRLDPRRISTP
SGTQLASMKTEDVSDVQTGSNGSGSLSTPPTSPVVTIDEERAEPLVDRVEPGSLDGAIAS
PIGNITAKEKLEPIHEDLEVEPVSELPSSSDLTVSSLSTNNETHHPKLDETEVDDGKDAS
CLKESDENSSAVPTTPTCEEIPHELPELPPIVILTEEQQESLTKTAVSRIIEAYRQVRLT
GSSHIRLALLARLVAQTDANDDIVGMLQKHIIEDYQHQKGHELVMHVLYHLHSVMISEEG
TDFSFDDSVYEKFLLIVAKALRDSLPASDKSLSRLLGEVPLLPASALKLLENLCQPDASD
HQGNELRNGDRVTQGLGAVWSLILGRPLVRQVCLDIALKCAVHSQDDVRAKAIRLVANKL
YHLSYVSDNIEHFATNMLFSVVDGEPVADGKSTYLDPNEQRLQTEETSASGSQSSAPDIL
DCVEKVARNVPVVSLSQAQCCMSLFFALCTKKPSLLQLVFDIYGRAPKAVKQAAHRHIPI
LLRTLGPSYSELLHIISNPPPGSENLLMLVLQILTEEMTPSPDLIATVKHLYATKLKDAA
VLIPLLSLLSKDEVLPIFPRLVDLPLEKFQIALARILQGSAHTGPALTPAEVIIALHGID
PEKDGIALKKITEACSACFEQRTVFTQNVLAKALKQMVEQTPLPLLFMRTVIQAIGTFPA
LVDFVMGILSRLVGKQIWRMPKLWVGFLKCASQTQPHSFRVLLQLPSPQLENALNRYPML
RPPLAGHANQPSIRTSLSRSVLQVLGLVREPQAPSPSLSQVSTHTPDAGSSVQSTTLA
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaacaaaccctagaagtcaggcgatttctcttctcgtggctgctaagaaccac
aatgatttggctgtgaagctttcatctctaagacaagctagggatattctgatctctagc
gatcccactgttgctgcagagctgattccttatgttgcggaccttcaagactctcctgat
tcgttggttcgcaaaaccctagctgaactaattggggatcttggtttgatggtgggggaa
agaatctgcatgttggtacctgtcttggtggcatttttgaaagacaactctcctgatgtt
gttaaacagacaatagttagtggctcaaaattatttcggaactcgttggaagatattgcg
ctgcagttcctcaaatttggtaaagtggagagatggcttgaagagctgtggttgtggatg
atgaagtttaaagatgctgtttgtgacaccgctttggggccttgtacggttgcaacaaag
ttgcttgcagtgaagtttctcgaaactcttattttgcttttcacacctgaagcaaatgat
tgtcaggccccttctccacttgaacttaaagaaggaagagtgagagattttaatatgtca
tgggtagttagaggccatccgattcttgatcttgctatgctgactcaggttgcgaacaac
agtcttggtctgctgttggatctgctgcaatcgtctaatgttcagaagctccctacttca
ttgatcatagttctcatcaattgtcttgcagcagttgccaagaagcggcctctgcattat
agccgtgttctccctgcactacttgggtttgattcggatacatgtaaaggaggtcattct
gtgagcattcaacattccctaaagacttccttcttgggatttttgaagtgtacacatcca
gttgtcttgtcgtcacgcgatcgattgcttgtagcattacgagcaataaatgctggagac
gtcgctgatcaagtcgtaagacaagtagacagaatggttaaatatgctgagcgaacggca
agggatttacgttttggaaaggacgaacttcttgcaggcgatcccattaggaagaggccc
ttggctcctgatgatggggctgacaccaataatgatgatatacctgcaaaacgtactcga
cttgacttattatcatctcctgatcaaccttctcaattgattaatgatcaactcccagat
agtggtctaataaatggaacttctggaccagcctctttgctgggaagtgagatgactcct
gtccaacaaatgattgccatgatcggggctctacttgcagaaggagaaaggggtgccgag
tccttggagattctaatttcaaagatacatccagatttgttagctgatatagtcatggct
aatatgaaatacctccctaagggtcccccacctttatctactcggcttgcgaactcacag
gcagcatcgccatggcctccaggtcttgcctcagatctaataccatcatctggaccagct
tcaagtagcttgaactcaccatctttggatgcatgtgcttctccaagccttctctccgac
tcaaagcgtgatcctcggagggacctccgtcgcttggacccacgacgcatatcaacacct
tctggaacgcaattagcttctatgaagactgaggatgtgagtgatgtgcaaactggctcg
aatggttctggttctttgagtacacctccgacttcccctgttgtgacaatagatgaagaa
agggcggagcccttggtagacagagttgaacccgggtccttagatggtgctattgcttct
ccaatcggcaatatcactgctaaagaaaagttagaacctattcacgaagatcttgaggta
gagcctgtttcagaacttcctagttcttcagatttgacagtttcatcgcttagtacgaat
aatgaaactcatcatcccaaattggatgagactgaagttgatgatggtaaggatgcttct
tgtctcaaagaatctgatgaaaattcttctgctgtcccaaccacaccaacatgtgaagag
attccccatgagttgcctgagcttcccccaattgtgattttgacggaggaacagcaagag
tcactgaccaagactgctgtttcacggataattgaggcatataggcaagttcgtctgact
ggtagcagtcatattcgccttgcgttacttgctcgtttggttgctcagactgatgccaat
gatgacattgtcgggatgttgcagaagcacataattgaagattaccaacatcaaaaggga
catgagcttgtaatgcatgtactttaccatcttcattcagttatgatatctgaagaggga
actgatttctcttttgatgactcagtttacgaaaagtttctcttgattgtggcaaaggct
ttacgtgattccttgccagcatcagataaatccctcagtcgattacttggtgaagtaccg
cttttgcctgcctctgctttgaaactgttagagaatctttgccaaccagatgcatctgac
caccaaggaaatgaattgcgcaatggcgaccgggtcactcaaggccttggtgctgtatgg
agcttgattttggggcgcccacttgttcggcaagtgtgcctggatatcgccctgaagtgt
gcggtgcactcacaagatgatgtgagagccaaggctattcgtttggtggcaaacaaactc
tatcacctgagctacgtatctgataatattgagcactttgctacaaatatgttgttctct
gttgttgacggtgagccagtggcagatggtaaaagcacatatttggaccccaatgaacaa
agattgcaaacagaggagacctctgctagtgggtcacagagttcggctcctgatatcctt
gattgtgttgaaaaggttgcaagaaatgtcccagttgtttccttgtctcaagctcaatgc
tgcatgtcgttgttctttgctttatgtactaagaaacccagtcttcttcaactggtattt
gatatttatggacgtgcacctaaggcagtcaagcaggcagcacatcggcacattcctatc
cttttaaggacccttgggccatcctattcagaattgcttcatattatatctaacccacct
ccaggaagcgaaaatcttttaatgctggtattgcaaattttgactgaagaaatgacgcct
tctcctgatctgattgctactgttaagcatttatatgcgactaaactgaaggatgcagca
gtccttatcccattgctatccttactatcaaaagatgaggttctgcctatatttcctcga
cttgtcgatcttccactggagaagttccagattgctcttgctcgaattcttcagggctcg
gctcatacaggtccagcattaacgcctgccgaagtgattattgccctccatgggattgat
cctgagaaagatgggattgcacttaagaagataacagaagcttgttctgcttgttttgag
caacggactgttttcactcaaaatgtcttagcaaaagctctgaaacaaatggttgaacaa
acccctctacctttgcttttcatgagaactgttattcaagctataggcacctttccagct
ctggttgattttgttatgggtatactatccaggctggtgggtaagcagatctggaggatg
ccaaagttgtgggtgggattcttgaaatgtgcttctcagacgcagcctcactcatttcgt
gtgctattacagttaccttctccgcagctcgagaatgctctaaacaggtaccccatgctg
aggcctcctcttgctggccatgccaaccaacctagcatcagaacttctctctcaagatcg
gttcttcaagttttgggtctggttcgtgaacctcaggcaccctccccttcactttcacaa
gtatcgacacacactcctgatgcaggctcttctgtccagagtacgacccttgcatag
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