Amborella trichopoda: 18442840
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Entry
18442840 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atr04131
]
18442840
04121 Ubiquitin system [BR:
atr04121
]
18442840
Enzymes [BR:
atr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18442840
Membrane trafficking [BR:
atr04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
18442840
Ubiquitin system [BR:
atr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18442840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_11
zf-C3HC4_3
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
Rad50_zn_hook
zf-Nse
zf-HC5HC2H_2
CxC4
HypA
zf-RING-like
DUF1272
Motif
Other DBs
NCBI-GeneID:
18442840
NCBI-ProteinID:
XP_020528350
LinkDB
All DBs
Position
Unknown
AA seq
308 aa
AA seq
DB search
MSSSGNTHWCHECRRAVRLSSRESQCPNCNGGFIEELGDLGGLSXTFFGNYDDDQEPGAR
IIEALSALLGEHRSGRRSREVDVRGRIGQNREGIGFGFGPWVVFRGQLPARMMDEGGMEF
FFDAGSGVGLRRLPPNFSDYFMDSRLEALIEQLTQNDRRGPPPASRSSIDAMPTIKITQR
HLRGDSHCPVCKDKFEIGIEAREMPCKHIYHSDCIVPWLVQHNSCPVCRQELTAQNASTA
RDTGRPSNGNRSTGSNVEGQGRRNLFSFLWPFRSSSSTSNHRETGDSSSTTTATATATHE
ANIWPFED
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtagtgggaatacacactggtgccatgaatgccggcgtgcagtacgcctctct
agtcgagaatcccaatgtcctaattgcaatggaggtttcatagaagaacttggagattta
ggaggtctctcannaacctttttcggaaattatgatgacgatcaagagccaggggctcga
atcatcgaggccctatcagccttgctaggtgaacatcgatcaggcaggagatctcgtgaa
gttgatgtacgagggcgtatcggtcaaaaccgagaaggcatcgggtttgggtttgggcca
tgggtggtctttaggggccaactccctgctcgaatgatggatgaagggggaatggagttt
ttttttgatgcgggctctggtgtcgggctaagacgcttacccccaaattttagtgactat
ttcatggactcgaggctcgaagccttgatcgagcagctcactcaaaatgacaggcgtggc
cccccacctgcctcccgatcctcaatagacgcaatgcccacaattaagatcactcaaagg
catctgcgtggagattcacattgccctgtctgcaaggataagtttgaaattggtatcgaa
gcaagagaaatgccatgtaagcacatttatcactcagattgcattgttccttggctggtt
caacataattcctgcccggtttgtaggcaagaattaactgcacaaaacgctagcactgct
cgtgatactggtaggcctagcaatggaaaccggagtactggtagcaatgtggaaggccaa
gggagacggaacctgttctcttttctttggccattccgatcatctagctcgacttcaaac
catagggagactggagatagcagctcgacaacaactgcaactgcaactgcaacccatgag
gcgaatatatggccttttgaagattag
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