Amborella trichopoda: 18443090
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Entry
18443090 CDS
T02990
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18443090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18443090
03012 Translation factors [BR:
atr03012
]
18443090
Enzymes [BR:
atr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18443090
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18443090
Translation factors [BR:
atr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18443090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
Ank_2
HA2_N
Ank_5
Ank
DEAD
Ank_4
Ank_3
Motif
Other DBs
NCBI-GeneID:
18443090
NCBI-ProteinID:
XP_011626613
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MQNCVLSAKAHICNTVAERIASERGENVGESVGYKIRLESSGGKHSSIMFCTNGVLLRLL
VGRGALEASKTGGECKAKKAGGLELTHIIVDEIHERDRYADFMLTIIRDMLPLCPHLRLI
MMSATFDAERFSQYFGGCPIIQVPGFTYPVKSYYLEDVLCILRSAANNHLEGAIFNGNKE
LTNLNDEHRVALDEALGLAWSSDDFDPLLELISTQPTPETYNYQHSESGMTPLMICAGKG
RVDDICLLLSFGVACYLKAKDGSTALDWAQRENQTESVEIIKAHMNMEISESLDEKQLLE
RYQSTISSDHVDTVLIEKLLIKICSDSNKGAILVFLPGWEDINETRERLLSSPIFSDPSK
CLILALHSLIPSEDQKQVFKRPRHGIRKIILSTNIAETSVTIDDIVYVIDCGRMKEKSYD
PYNNVSTFQSSWVSKASAKQRRGRAGRCQPGFCYHLYSKARAMSLLDYQVPEIKRMPIDE
LCLQLKMLNPESRIVEFLQKTPDPPVFEAVRNAIIVLQDLGALSKDESLTELGEKIGSLP
VRPSTSKMLLFAILVNCLDPALTFACASEYRDPFVLPVAPDAKKKANAAKAKLSSLYGGK
SDQLTVIAAFESWMQAKAKGKKSESEFCSYYFISPGIMYMILNMRKKLRSELVQLGFIPQ
DVSSYSLNSKDPGILRAVLAAGMYPMVGRLLPPLGGAQRAVVETSSGAKVRLHYHSCNYR
AANNLTTERPLLVYDEITRGDMGMYVKNCTIVGPYPLLFWATELAVAPLNNEAESDLEDD
SSDSEEDEMDIEGSVGRRHGERLLSSPDNPVLVVVDRWIKFQSTALDVAQIYCLREQLSA
AILFKVKESHKALPPALAASMHAIAGILSNSNISEMPSAKESIDTLTTMVSTARIDPRNS
SNGMHLAGARHSCNTRSRALPKHNRSRNRRGIPNVQMPMEPLGTDSMNPYLSHKHQPAML
SASDQGLLLDGGPPFKRRGSLKRNWRKKP
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattgtgtgctctcagccaaggcgcatatctgcaatacagttgccgagagaatt
gcctctgagaggggagaaaatgttggagaaagtgttggttacaagataagattggaatcc
agtggtggtaagcactcctccattatgttttgtacgaatggagttcttttgaggctgttg
gttggccgtggagctctcgaggcatcaaagacaggtggagagtgtaaagccaagaaagct
ggtggactcgaacttacccacataatagtggatgaaattcatgaaagggaccgatatgct
gactttatgcttacaattattagagacatgcttcctttgtgccctcatctgcgactgata
atgatgagtgccacttttgatgctgaacgattttcgcaatatttcggcggctgcccaata
attcaagtccctgggtttacatatccggtcaaaagttactatttagaggacgtactttgt
atcttgaggtcggctgcaaataatcacctagagggagcaatattcaatggcaataaagaa
ctcaccaatttgaacgacgaacatagagttgccttggatgaagcacttggcttggcatgg
tcaagtgatgattttgatccccttttggaactgatttctacacaaccaactcctgaaact
tataattatcaacactcagaatctggcatgacccctttgatgatttgtgctggaaaaggc
agagttgatgatatttgtttgctactttcatttggtgtggcttgctatctaaaagcaaaa
gatggaagtacagcgttggactgggctcagcgagaaaaccagacagagtcagtagaaatc
atcaaagcccacatgaatatggaaatctcagagtccctagatgagaaacaacttctcgaa
aggtaccagtcaactattagttcagaccatgtcgacacagttctcattgagaaattgttg
ataaaaatttgtagcgattccaacaagggagccatcctcgtctttctgccaggttgggaa
gatataaatgagactagagaacgattactttcttccccaatattcagtgatccctctaag
tgtttgattctagcacttcactctttgattccatctgaagatcaaaaacaagtattcaaa
aggcctcgtcatggtattcgaaagattatcctttccaccaatattgcggagacctcagtc
actatagatgatattgtatatgttatagattgtggtcggatgaaagagaaaagctatgat
ccttataacaatgtgtccacttttcaatcttcttgggtttcaaaggccagtgctaagcag
cgacgggggcgtgcaggccgttgccaaccgggtttctgttaccatctatattcgaaagcc
cgcgcaatgtctctgctggactaccaagttcctgaaatcaagcgaatgcccattgacgaa
ctctgcttacagttgaaaatgctcaacccagagtctcgaattgttgaattcctacaaaag
actcctgacccaccagtctttgaagcagttcgcaatgccatcatagttctccaagacctc
ggggcattatcgaaggacgaatccctaactgagctgggagagaaaattggctcccttcct
gttcggccttcaactagcaagatgcttctctttgccattttagtgaactgtcttgacccc
gccctaacttttgcatgcgcatcagaatatcgagatccctttgttcttcctgtggctcct
gatgcaaagaagaaagctaatgctgccaaagccaagttgtcctcattgtatggtggcaaa
agtgatcagctcactgttatagctgcattcgaaagctggatgcaagcaaaggccaaaggg
aagaaatccgaatctgaattttgctcttattacttcatctcacctggcatcatgtatatg
atattgaacatgcggaagaagctaaggagcgaattagttcagcttggttttattcctcaa
gatgtctctagttatagcttgaattctaaagacccaggcattcttcgtgctgttctggca
gctggtatgtatccgatggtggggaggttgttaccgcctcttgggggtgctcaaagggct
gtcgtagaaacatcaagtggtgctaaggttcgtttgcactatcactcttgtaattataga
gcagctaataatttgactactgagcgtcccttgcttgtgtatgatgaaattactcgtggc
gatatgggtatgtatgtgaaaaactgtaccattgtagggccctacccattgttgttctgg
gccactgaattagcggtagcccctttgaataatgaggcagagagtgatttggaggatgat
agctctgatagtgaggaggatgaaatggatattgagggctcagttggtcgaaggcatgga
gaaaggcttctttcttcacctgataatcctgtattggttgtggtggatcggtggattaag
tttcagtccactgcactggatgttgctcagatatactgcttaagggagcagctatcagcg
gctatcttgtttaaagtgaaggagtctcacaaagcgctcccaccggctctcgcagcatcc
atgcatgcaattgctggcattctctctaattccaatatttcagaaatgccctcagctaaa
gagtcaatagacaccttgaccaccatggttagcactgccagaatcgatcctcgaaactca
tcaaatggcatgcacttagctggagctcgccattcttgcaacacacgaagcagggcactt
cctaaacacaaccgcagtagaaataggaggggcataccaaatgttcaaatgcccatggaa
cctttgggtaccgactcgatgaacccatatctatctcataagcatcaaccagccatgttg
tctgcctcggatcaagggctcctgttggatggtgggccccccttcaaaagacgtgggtct
ttaaaacgaaattggagaaagaagccctga
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