KEGG   Amborella trichopoda: 18443209
Entry
18443209          CDS       T02990                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
atr  Amborella trichopoda
Pathway
atr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    18443209
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:atr04121]
    18443209
   03036 Chromosome and associated proteins [BR:atr03036]
    18443209
Enzymes [BR:atr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     18443209
Ubiquitin system [BR:atr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    18443209
Chromosome and associated proteins [BR:atr03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     18443209
    Noncanonical PRC1 (PRC1.1)
     18443209
    Noncanonical PRC1 (PRC1.3/1.5)
     18443209
    Noncanonical PRC1 (PRC1.6)
     18443209
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-RING_UBOX DUF3337 zf-C3HC4_4 zf-RING_4 zf-rbx1 zf-RING_6 zf-UDP zf-Nse zf-C3HC4_5 zf-RING_11
Other DBs
NCBI-GeneID: 18443209
NCBI-ProteinID: XP_011626648
LinkDB
Position
Unknown
AA seq 436 aa
MPAQKRSVSPDSPPMEHNSDDSQESPSSSGDKDEFVLVKLSDIRKEVQCPICLGIIRKTR
TVMECLHRFCRECIDKSMRLGNNECPACRTHCPSRRSLRDDPNYDTLIAAIYPDVDKYEE
EELAFHEEEKSRNKQIQATIAQTFRRQSEAYVKRKSSAKATAAAFVRKANYRNSRRKNRS
GPDSSNAGSDDADEETNGNEGAKDSSSADEPSPEVRHKRCRRWAGTRTSHGSTNIDGGSN
ENEDNNVEASRESSGASPCIGGNPEKLSWGKGGVRSHTRYGSVSGSYEKNQRNRRIARIM
DYFFNKSMEENEDEFDIHLTLVPWDEESIPSLQRPYICCRPTVTVNYLCQYIAVETSVKA
EDLELMVRKSRDGMLSDCLSQPDPSTSADQNPRPSENENLQILPTQETLAALHACYPCSR
GDLVLIYRQKSTNPIE
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgcctgcccagaagcgttcagttagtccagactctcctccaatggagcacaattcggat
gattcacaggagagcccttcttcaagcggggacaaggacgagtttgtcctggtcaaactg
tcagatatacgcaaagaagttcaatgccccatttgcttagggatcatcaggaagacaaga
actgtgatggagtgcttgcatcgattttgccgggaatgtatcgacaaatcaatgcgcttg
ggaaataacgaatgtcctgcatgtcgtacacattgtccaagtcggcgttctttgagggat
gatccaaattatgataccctcattgcagctatctatccagatgtagataagtatgaggag
gaggaactggcatttcatgaagaagaaaagagccggaataagcagattcaagcaaccata
gcacagaccttcaggcgccagtccgaagcgtatgttaagcgaaagagcagcgcaaaagcc
accgctgctgcttttgtgaggaaagcaaactaccgaaattcgagacggaagaatagaagt
gggcccgattcgagcaatgcaggctctgatgatgctgatgaggaaacaaatgggaatgaa
ggggccaaagattcctcttcagccgatgagccctctcctgaggtccggcacaagagatgc
aggaggtgggcgggcaccaggacttcacatggctcaactaacattgatggtgggtctaat
gagaatgaagataataatgttgaagcgagtagagagagctctggggcttctccttgtatt
ggaggaaacccggagaagctttcttggggcaagggtggggtcaggagccatacaaggtat
gggagcgtgagtggatcatatgagaagaaccaaaggaacaggcgcattgcaaggattatg
gattactttttcaacaaatcaatggaggagaatgaagatgagttcgatatacatcttaca
cttgtaccttgggacgaagaaagtatcccgagtttgcagcgaccttatatttgctgccgg
cccacagtgactgtcaattacttatgtcaatatattgctgtcgagacatctgttaaagca
gaggaccttgaactcatggtaaggaaatcgagagatggaatgctgagtgattgcctatct
caaccagacccttcaacgtccgccgatcaaaatcctcgtccctcagaaaatgaaaatctg
caaatactgccaacacaggaaacattggcagcgctgcatgcttgttacccctgctctcgt
ggtgatctggttttgatatatcgacaaaaatcaacgaaccccatcgaatga

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