Amborella trichopoda: 18443331
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Entry
18443331 CDS
T02990
Name
(RefSeq) geranylgeranyl pyrophosphate synthase, chloroplastic
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
atr
Amborella trichopoda
Pathway
atr00900
Terpenoid backbone biosynthesis
atr01100
Metabolic pathways
atr01110
Biosynthesis of secondary metabolites
Module
atr_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
18443331
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
atr01006
]
18443331
Enzymes [BR:
atr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
18443331
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
18443331
2.5.1.29 geranylgeranyl diphosphate synthase
18443331
Prenyltransferases [BR:
atr01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
18443331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Terpene_synth_C
Motif
Other DBs
NCBI-GeneID:
18443331
NCBI-ProteinID:
XP_006853583
LinkDB
All DBs
Position
Unknown
AA seq
369 aa
AA seq
DB search
MASISISSPQQTLNHSIHASRRRSICNQPILGIVKVPSMRTSIWVKYSALADPTSPVARL
TRLDLPSQVEPMSEFDFEAYMKVKADRVNRALDVAVPLCHPEQINESMRYSLLASGKRVR
PMLCLAACELVGGHEGDVMAAACAVEMVHTMSLIHDDLPCMDNDDLRRGRPTNHKVFGEG
MAVLAGDALLSLAFEHLAAHTPTHVGSNRILGAIVELGKAVGAEGLVAGQIIDIASEGDP
KVDLEVLEYIHVHKTAVLLECSVVCGAMLGGGSDEDVEKLRTYARHIGLLFQVVDDILDV
TASTEELGKTAGKDMVSDKATYPKLMGLSQARDFAEDLLNKAKEGLAGFDPAKAAPLLGL
ADYIAHRTN
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatatcaatctctagcccccaacaaaccctaaaccactcaattcatgcatca
aggagaagaagcatatgcaatcaacccattctggggattgtgaaggtccccagcatgagg
actagcatttgggtgaagtactctgccctagccgatcccactagcccggttgctaggctg
actaggctcgacttgccttctcaggtcgaacctatgtcggagtttgactttgaggcatac
atgaaggtcaaggcggatcgtgtgaaccgcgcgctcgatgtggcggttcctctgtgtcat
ccagagcagatcaatgagtcaatgcgctactcgttgttggcgagtgggaagcgcgtgcgc
cccatgctgtgcctggcagcatgtgaacttgtgggcgggcacgagggggatgtgatggct
gcagcgtgcgctgttgagatggtacacaccatgtccctcatccatgacgacctcccatgc
atggacaacgacgacctccgccgggggcgacctaccaaccacaaggtctttggtgagggc
atggccgtactggcaggtgacgctcttctatcacttgcattcgagcatttagccgctcac
acaccaacacatgtcggctccaataggattttgggggcaatcgtcgagctgggaaaagca
gtcggtgcagagggacttgttgccgggcaaatcatagacatcgcgagcgaaggtgatcct
aaggtggacttggaggttttagaatacatccatgtccataagactgcggtcttgctggag
tgttcggtggtgtgtggggcaatgctgggaggtggctctgatgaggatgttgaaaagctc
cgcacgtatgcacgccacatcggattgttgttccaagtggtcgatgacatattagatgtg
actgcatccacagaggagcttggaaagacggctggcaaggacatggtgagcgacaaggcc
acataccctaaattgatggggctcagccaagctagggactttgcagaggatctccttaac
aaggccaaggagggcttggccggattcgacccggccaaggccgcccctctcctaggcttg
gcggattacattgcccatcgtacaaattga
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